RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 ASPHD1Q5U4P2 390 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 FAM122CQ6P4D5 195 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 TMEM116Q8NCL8 245 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 NPIPB3Q92617 1050 aa11.28□□□□□ -0.6
USP39-207ENST00000450066 EIF5A2Q9GZV4 153 aaKnown RBP11.28□□□□□ -0.6
USP39-207ENST00000450066 LINC00869P0C866 280 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 OR10J1P30954 320 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 GCSAMLQ5JQS6 135 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 TTC9CQ8N5M4 171 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 C5orf56Q8N8D9 126 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 THAP8Q8NA92 274 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 C22orf15Q8WYQ4 148 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 RAB24Q969Q5 203 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 SLC25A33Q9BSK2 321 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 SMDT1Q9H4I9 107 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 SLC25A22Q9H936 323 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 MOB4Q9Y3A3 225 aa11.27□□□□□ -0.61
USP39-207ENST00000450066 SOX21Q9Y651 276 aaPredicted RBP11.27□□□□□ -0.61
USP39-207ENST00000450066 ITPR3Q14573 2671 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 RBFOX3A6NFN3 312 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 MT-CO2P00403 227 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 IGHV3-48P01763 117 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 EGR2P11161 476 aaPredicted RBP11.26□□□□□ -0.61
USP39-207ENST00000450066 CDC34P49427 236 aaPredicted RBP11.26□□□□□ -0.61
USP39-207ENST00000450066 RND2P52198 227 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 HSPB9Q9BQS6 159 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 MRPL36Q9P0J6 103 aaKnown RBP11.26□□□□□ -0.61
USP39-207ENST00000450066 TEX15Q9BXT5 2789 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 I3L2K1 104 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 FGF8P55075 233 aaPredicted RBP11.26□□□□□ -0.61
USP39-207ENST00000450066 PMS2P11Q13670 270 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 CYB5R2Q6BCY4 276 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 TMEM219Q86XT9 240 aa11.26□□□□□ -0.61
USP39-207ENST00000450066 ABCA1O95477 2261 aa11.25□□□□□ -0.61
USP39-207ENST00000450066 IGKV1D-37A0A075B6S9 117 aa11.25□□□□□ -0.61
USP39-207ENST00000450066 A0A1W2PPV4 95 aa11.25□□□□□ -0.61
USP39-207ENST00000450066 FSHBP01225 129 aa11.25□□□□□ -0.61
USP39-207ENST00000450066 CYP2G1PQ6ZSU1 146 aa11.25□□□□□ -0.61
USP39-207ENST00000450066 WFDC11Q8NEX6 87 aa11.25□□□□□ -0.61
USP39-207ENST00000450066 SGMS2Q8NHU3 365 aa11.25□□□□□ -0.61
USP39-207ENST00000450066 ZNF469Q96JG9 3925 aaPredicted RBP11.25□□□□□ -0.61
USP39-207ENST00000450066 TCRBV4S1A1TA0A5B7 111 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 A6NDX4 124 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 ZFP92A6NM28 416 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 C9JQL5 133 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 H3BUX3 64 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 SELENOTP62341 195 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 NANPQ8TBE9 248 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 RARRES2Q99969 163 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 PRRC2AP48634 2157 aaKnown RBP11.24□□□□□ -0.61
USP39-207ENST00000450066 IGLV11-55A0A075B6I3 123 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 SFTA3P0C7M3 94 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 HAGHQ16775 308 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 C10orf91Q5T1B1 145 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 FOXC2Q99958 501 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 C19orf24Q9BVV8 132 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 GNG13Q9P2W3 67 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 PITPNC1Q9UKF7 332 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 CCDC168Q8NDH2 2452 aa11.24□□□□□ -0.61
USP39-207ENST00000450066 CSPG4Q6UVK1 2322 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 K7EIM0 57 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 HMGB3O15347 200 aaKnown RBP11.23□□□□□ -0.61
USP39-207ENST00000450066 EIF3GO75821 320 aaKnown RBP eCLIP11.23□□□□□ -0.61
USP39-207ENST00000450066 AMY1AP04745 511 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 ADCYAP1P18509 176 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 GATA2P23769 480 aaPredicted RBP11.23□□□□□ -0.61
USP39-207ENST00000450066 RHOBP62745 196 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 ZNF506Q5JVG8 444 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 OR4X1Q8NH49 305 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 TMEM68Q96MH6 324 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 FANCD2OSQ96PS1 177 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 TRGV9Q99603 122 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 SEC11CQ9BY50 192 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 IGHV3-21A0A0B4J1V1 117 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 F8W036 122 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 M0QZK8 103 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 ATP6V0E1O15342 81 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 APOC3P02656 99 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 ZNF90Q03938 601 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 KHDC3LQ587J8 217 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 C9orf139Q6ZV77 190 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 CCDC28AQ8IWP9 274 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 SLC35B3Q9H1N7 401 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 SEPSECSQ9HD40 501 aaKnown RBP11.23□□□□□ -0.61
USP39-207ENST00000450066 TNFRSF19Q9NS68 423 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 MXRA5Q9NR99 2828 aa11.23□□□□□ -0.61
USP39-207ENST00000450066 HECTD1Q9ULT8 2610 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 AKAP9Q99996 3911 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 IFNA1P01562 189 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 BCL2P10415 239 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 PPT1P50897 306 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 ICAM4Q14773 271 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 DEFB112Q30KQ8 113 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 AKIRIN2Q53H80 203 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 RBMS3Q6XE24 437 aaKnown RBP11.22□□□□□ -0.61
USP39-207ENST00000450066 C16orf82Q7Z2V1 217 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 OR5T1Q8NG75 326 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 TMUB1Q9BVT8 246 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 THYN1Q9P016 225 aa11.22□□□□□ -0.61
USP39-207ENST00000450066 CARHSP1Q9Y2V2 147 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms