RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 REG3AQ06141 175 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 SRSF6Q13247 344 aaKnown RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 KIR2DS1Q14954 304 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 HERPUD1Q15011 391 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 GABRA6Q16445 453 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 TBC1D28Q2M2D7 210 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 RPEL1Q2QD12 228 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 AKIRIN2Q53H80 203 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 LRRC10Q5BKY1 277 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 ZNF818PQ6ZRF7 136 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 Q6ZS49 121 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 LINC00596Q86U02 117 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 SELENOHQ8IZQ5 122 aaKnown RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 GAPTQ8N292 157 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 C17orf78Q8N4C9 275 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 ZFP62Q8NB50 900 aaPredicted RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 SUMF2Q8NBJ7 301 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 OR10G9Q8NGN4 311 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 OR8U1Q8NH10 309 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 MRPL30Q8TCC3 161 aaKnown RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 RDH5Q92781 318 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 SMIM8Q96KF7 97 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 SPIN2AQ99865 258 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 RASL11BQ9BPW5 248 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 SPIN2BQ9BPZ2 258 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 GINS3Q9BRX5 216 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 ADAT1Q9BUB4 502 aaKnown RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 PARP12Q9H0J9 701 aaKnown RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 TLNRD1Q9H1K6 362 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 PLEKHF2Q9H8W4 249 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 SPACA1Q9HBV2 294 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 PARP11Q9NR21 331 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 C19orf12Q9NSK7 152 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 CARHSP1Q9Y2V2 147 aaKnown RBP2.94□□□□□ -1.94
VPS29-202ENST00000447578 MPC1Q9Y5U8 109 aa2.94□□□□□ -1.94
VPS29-202ENST00000447578 CHD7Q9P2D1 2997 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 MPDZO75970 2070 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 IGKV1-6A0A0C4DH72 117 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 IGHV3-64DA0A0J9YX35 117 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 A0A1B0GV50 99 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 IGSF23A1L1A6 192 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 PSMB11A5LHX3 300 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 C9JQL5 133 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 H0Y980 276 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 J3QT63 122 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 SSSCA1O60232 199 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 PITX3O75364 302 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 PGLYRP1O75594 196 aaPredicted RBP2.93□□□□□ -1.94
VPS29-202ENST00000447578 LYZL6O75951 148 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 CDS2O95674 445 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 SFTA3P0C7M3 94 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 SEC11BP0C7V7 166 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 ZNF806P0C7X5 589 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 CT45A6P0DMU7 189 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 CT45A5P0DMU8 189 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 CT45A7P0DMV0 189 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 OMGP23515 440 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 NFYBP25208 207 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 S100GP29377 79 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 KCNJ3P48549 501 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 PPP1CBP62140 327 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 FLI1Q01543 452 aaPredicted RBP2.93□□□□□ -1.94
VPS29-202ENST00000447578 ZNF616Q08AN1 781 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 SLAQ13239 276 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 PEA15Q15121 130 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 OR8G1Q15617 311 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 ZNF726P1Q15940 193 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 CT45A1Q5HYN5 189 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 COA6Q5JTJ3 125 aaKnown RBP2.93□□□□□ -1.94
VPS29-202ENST00000447578 C9orf129Q5T035 196 aaKnown RBP2.93□□□□□ -1.94
VPS29-202ENST00000447578 C10orf91Q5T1B1 145 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 Q6P435 159 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 LINC00173Q6ZV60 143 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 WDR86Q86TI4 376 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 CBLN2Q8IUK8 224 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 H1FOOQ8IZA3 346 aaPredicted RBP2.93□□□□□ -1.94
VPS29-202ENST00000447578 UBAC2Q8NBM4 344 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 DEFB124Q8NES8 71 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 FDCSPQ8NFU4 85 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 OR51H1Q8NH63 302 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 OR10J5Q8NHC4 309 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 CT45A3Q8NHU0 189 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 RNASE11Q8TAA1 199 aaKnown RBP2.93□□□□□ -1.94
VPS29-202ENST00000447578 FAM213BQ8TBF2 198 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 SLC25A40Q8TBP6 338 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 IL22RA2Q969J5 263 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 GPR146Q96CH1 333 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 TMEM56Q96MV1 263 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 RTL8AQ9BWD3 113 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 SEC11CQ9BY50 192 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 OR2J1Q9GZK6 312 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 SLC25A31Q9H0C2 315 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 TMEM222Q9H0R3 208 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 SH3BGRL3Q9H299 93 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 ARV1Q9H2C2 271 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 OR51I2Q9H344 312 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 C11orf1Q9H5F2 150 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 ZMAT5Q9UDW3 170 aaKnown RBP2.93□□□□□ -1.94
VPS29-202ENST00000447578 CACFD1Q9UGQ2 172 aa2.93□□□□□ -1.94
VPS29-202ENST00000447578 TRAPPC2LQ9UL33 140 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms