RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TNFSF15O95150 251 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 UCHL1P09936 223 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 PTHLHP12272 177 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 SRIP30626 198 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 LPAR6P43657 344 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 MEF2BQ02080 365 aaPredicted RBP1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 ZC2HC1BQ5TFG8 222 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF440Q8IYI8 595 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 OR10D4PQ8NGN7 298 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 LINC01006Q8NI28 216 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 RPS4Y2Q8TD47 263 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 YIPF3Q9GZM5 350 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF286AQ9HBT8 521 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 FUT9Q9Y231 359 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 PRSS21Q9Y6M0 314 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 PLCH1Q4KWH8 1693 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 NKX2-6A6NCS4 301 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 MEIS3P1A6NDR6 274 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 GABARAPH6UMI1 98 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 GNG7O60262 68 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 KLF3P57682 345 aaPredicted RBP1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 HNRNPA0Q13151 305 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 H1FOOQ8IZA3 346 aaPredicted RBP1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 Q8N976 141 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 LINC01560Q8TB33 94 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 H1FXQ92522 213 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 STARD4Q96DR4 205 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 PEBP4Q96S96 227 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 SLC25A21Q9BQT8 299 aaPredicted RBP1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 LXNQ9BS40 222 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 LPAR5Q9H1C0 372 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 MRPS16Q9Y3D3 137 aaKnown RBP1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 TRAPPC1Q9Y5R8 145 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 PTPRJQ12913 1337 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 IGSF9BQ9UPX0 1349 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 CARMIL3Q8ND23 1372 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 LAMB4A4D0S4 1761 aa1.65□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV1-3A0A0C4DH29 117 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 TAX1BP3O14907 124 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 OR2T1O43869 369 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 CCR2P41597 374 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 GUCA1AP43080 201 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 AKR1D1P51857 326 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 CRISP3P54108 245 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 TAS2R20P59543 309 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 COPZ1P61923 177 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 NCS1P62166 190 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 SELENOWP63302 87 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 IGLV3-21P80748 117 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 C15orf32Q32M92 178 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 LRRC28Q86X40 367 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 MMGT1Q8N4V1 131 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 NUP35Q8NFH5 326 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 OR51A4Q8NGJ6 313 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 OR2T10Q8NGZ9 312 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 OR4C6Q8NH72 309 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF721Q8TF20 911 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF714Q96N38 554 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 CEP152O94986 1710 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 HCFC1P51610 2035 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 CLTCL1P53675 1640 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 PAPPAQ13219 1627 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 TMEM2Q9UHN6 1383 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 LMO7Q8WWI1 1683 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 A0A087WX48 190 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 IGHV3-21A0A0B4J1V1 117 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 TRAV41A0A0B4J266 112 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 LOC102725191A0A1B0GVB3 256 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 IRGMA1A4Y4 181 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 IZUMO1RA6ND01 250 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 SLPIP03973 132 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 PRM2P04554 102 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 SLC25A16P16260 332 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 EVI2AP22794 236 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 RPS3P23396 243 aaKnown RBP eCLIP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 SDC2P34741 201 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 ZNF678Q5SXM1 525 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 SLC25A34Q6PIV7 304 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 ADAMTS13Q76LX8 1427 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 OR5C1Q8NGR4 320 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 PYGO2Q9BRQ0 406 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 IL36BQ9NZH7 164 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 COL6A5A8TX70 2615 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 LMTK2Q8IWU2 1503 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 ERBINQ96RT1 1412 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 MEIKINA0A087WXM9 373 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 A0A1B0GW54 56 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 SOCS1O15524 211 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 NAPSAO96009 420 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 TRGC2P03986 189 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 OR5AC1P0C628 307 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 LGALS3P17931 250 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 RPL27AP46776 148 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 CXCL12P48061 93 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 EIF2B2P49770 351 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 RBM11P57052 281 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 YPEL3P61236 119 aaPredicted RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 AKR1C1Q04828 323 aa1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 EIF3IQ13347 325 aaKnown RBP1.64□□□□□ -2.15
CCDC88A-208ENST00000444458 HES1Q14469 280 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms