RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 CKS1BP61024 79 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 CFHR1Q03591 330 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 ZNF585BQ52M93 769 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 OR2K2Q8NGT1 345 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 CYTL1Q9NRR1 136 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 TEX38Q6PEX7 206 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 LHFPL4Q7Z7J7 247 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 TCF20Q9UGU0 1960 aaKnown RBP12.11□□□□□ -0.47
PTPRU-204ENST00000428026 GREB1Q4ZG55 1949 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 DLEU1O43261 78 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 TNFSF13O75888 250 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 CIARTQ8N365 385 aaPredicted RBP12.11□□□□□ -0.47
PTPRU-204ENST00000428026 LINC01560Q8TB33 94 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 COQ2Q96H96 371 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 TOMM7Q9P0U1 55 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 TRBV6-7A0A0A0MS04 114 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 IFNL4K9M1U5 179 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 PPIFP30405 207 aaKnown RBP12.11□□□□□ -0.47
PTPRU-204ENST00000428026 LYZL4Q96KX0 146 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 TNFRSF18Q9Y5U5 241 aa12.11□□□□□ -0.47
PTPRU-204ENST00000428026 J3QRE1 110 aa12.1□□□□□ -0.47
PTPRU-204ENST00000428026 TEX29Q8N6K0 151 aa12.1□□□□□ -0.47
PTPRU-204ENST00000428026 PDCD11Q14690 1871 aaKnown RBP12.1□□□□□ -0.47
PTPRU-204ENST00000428026 NTN3O00634 580 aaPredicted RBP12.1□□□□□ -0.47
PTPRU-204ENST00000428026 EVI2AP22794 236 aa12.1□□□□□ -0.47
PTPRU-204ENST00000428026 DMRTC2Q8IXT2 367 aaPredicted RBP12.1□□□□□ -0.47
PTPRU-204ENST00000428026 SPAG8Q99932 426 aaPredicted RBP12.1□□□□□ -0.47
PTPRU-204ENST00000428026 VCX2Q9H322 139 aa12.1□□□□□ -0.47
PTPRU-204ENST00000428026 ZNF319Q9P2F9 582 aa12.1□□□□□ -0.47
PTPRU-204ENST00000428026 FBXL7Q9UJT9 491 aa12.1□□□□□ -0.47
PTPRU-204ENST00000428026 OR4X2Q8NGF9 303 aa12.1□□□□□ -0.47
PTPRU-204ENST00000428026 COL6A6A6NMZ7 2263 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 A0A0G2JMM0 328 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 A0A1W2PPB8 328 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 KIR3DP1A8MWS1 328 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 TMEM256Q8N2U0 113 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 TMEM101Q96IK0 257 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 CELA3BP08861 270 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 CECR9P0C854 216 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 C1QTNF5Q9BXJ0 243 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 TRGV3P03979 118 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 SAA1P0DJI8 122 aaPredicted RBP12.09□□□□□ -0.47
PTPRU-204ENST00000428026 GZMBP10144 247 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 RNASE4P34096 147 aaKnown RBP12.09□□□□□ -0.47
PTPRU-204ENST00000428026 ID3Q02535 119 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 FOXL1Q12952 345 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 TIMM23BQ5SRD1 257 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 IMMP1LQ96LU5 166 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 REPIN1Q9BWE0 567 aaKnown RBP12.09□□□□□ -0.47
PTPRU-204ENST00000428026 OSTCQ9NRP0 149 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 IGKV1D-33P01593 117 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 IGKV1-33P01594 117 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 HBDP02042 147 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 PSG7Q13046 419 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 OR10J3Q5JRS4 329 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 TMEM144Q7Z5S9 345 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 GNB1LQ9BYB4 327 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 ZNF703Q9H7S9 590 aaPredicted RBP12.09□□□□□ -0.47
PTPRU-204ENST00000428026 DOCK8Q8NF50 2099 aa12.09□□□□□ -0.47
PTPRU-204ENST00000428026 TRBV24-1A0A075B6N3 115 aa12.08□□□□□ -0.47
PTPRU-204ENST00000428026 CD33P20138 364 aa12.08□□□□□ -0.47
PTPRU-204ENST00000428026 CD69Q07108 199 aa12.08□□□□□ -0.47
PTPRU-204ENST00000428026 PGPEP1Q9NXJ5 209 aa12.08□□□□□ -0.47
PTPRU-204ENST00000428026 ESPL1Q14674 2120 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 KBTBD11-OT1A0A1B0GTJ5 212 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 GAS1P54826 345 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 TIMP3P35625 211 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 MESP1Q9BRJ9 268 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 C21orf62Q9NYP8 219 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 TRBV7-9A0A0J9YWB2 115 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 A0A1B0GW15 77 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 H7C1H1 209 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 TMEM30BQ3MIR4 351 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 Q6AWC8 147 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 PIMREGQ9BSJ6 248 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 EPDR1Q9UM22 224 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 SAA2-SAA4A0A096LPE2 208 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 SAA2P0DJI9 122 aaPredicted RBP12.08□□□□□ -0.48
PTPRU-204ENST00000428026 EFNB3Q15768 340 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 SAMD5Q5TGI4 173 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 Q6ZT83 130 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 ZNF479Q96JC4 524 aa12.08□□□□□ -0.48
PTPRU-204ENST00000428026 NBASA2RRP1 2371 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 A0A1W2PRE2 83 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 HOXA3O43365 443 aaPredicted RBP12.07□□□□□ -0.48
PTPRU-204ENST00000428026 HGFACQ04756 655 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 LYPD3O95274 346 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 LCN12Q6JVE5 192 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 DPM2O94777 84 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 GLMPQ8WWB7 406 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 CACNG8Q8WXS5 425 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 SEMA5BQ9P283 1151 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 RNF115Q9Y4L5 304 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 LSM4Q9Y4Z0 139 aaKnown RBP12.07□□□□□ -0.48
PTPRU-204ENST00000428026 TRAV2A0A0B4J234 112 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 TRAV5A0A0B4J249 113 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 OR9G9P0C7N8 305 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 C1orf194Q5T5A4 169 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 CLEC19AQ6UXS0 136 aa12.07□□□□□ -0.48
PTPRU-204ENST00000428026 C2orf88Q9BSF0 95 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms