RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 TMEM167AQ8TBQ9 72 aa1.9□□□□□ -2.1
VPS13A-208ENST00000423463 ZFAND1Q8TCF1 268 aa1.9□□□□□ -2.1
VPS13A-208ENST00000423463 GATAD1Q8WUU5 269 aa1.9□□□□□ -2.1
VPS13A-208ENST00000423463 RBMXL1Q96E39 390 aaKnown RBP1.9□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF486Q96H40 463 aaPredicted RBP1.9□□□□□ -2.1
VPS13A-208ENST00000423463 CLCC1Q96S66 551 aa1.9□□□□□ -2.1
VPS13A-208ENST00000423463 ALKBH7Q9BT30 221 aaPredicted RBP1.9□□□□□ -2.1
VPS13A-208ENST00000423463 PARP11Q9NR21 331 aa1.9□□□□□ -2.1
VPS13A-208ENST00000423463 LINC00527Q9UJ94 153 aa1.9□□□□□ -2.1
VPS13A-208ENST00000423463 ANKRD20A5PA0PJZ0 165 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 SNURFLB1AK76 121 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 G3V318 75 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 H3BUA1 57 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 ARPC1BO15143 372 aaKnown RBP1.9□□□□□ -2.11
VPS13A-208ENST00000423463 B3GALNT1O75752 331 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 OR2A4O95047 310 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 CA2P00918 260 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF735P0CB33 412 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 AKAIN1P0CW23 69 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 NQO2P16083 231 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 LPAR6P43657 344 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 RAB9AP51151 201 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 TAS2R31P59538 309 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 SURF2Q15527 256 aaPredicted RBP1.9□□□□□ -2.11
VPS13A-208ENST00000423463 AARDQ4LEZ3 155 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 LINC00299Q6ZSB3 139 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 LHFPL1Q86WI0 220 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF695Q8IW36 515 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 PUSL1Q8N0Z8 303 aaKnown RBP1.9□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF491Q8N8L2 437 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 LFNGQ8NES3 379 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 OR6Q1Q8NGQ2 317 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 MYOZ3Q8TDC0 251 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 DEDD2Q8WXF8 326 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 ARPC1AQ92747 370 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 UBE2E2Q96LR5 201 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 SCGB3A2Q96PL1 93 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 OR2A7Q96R45 310 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 SPIN2AQ99865 258 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 ASCL2Q99929 193 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 PRRT1Q99946 306 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 SPIN2BQ9BPZ2 258 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 BET1LQ9NYM9 111 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 COMMD9Q9P000 198 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 FOXA2Q9Y261 457 aaPredicted RBP1.9□□□□□ -2.11
VPS13A-208ENST00000423463 WSB1Q9Y6I7 421 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 STAB1Q9NY15 2570 aa1.9□□□□□ -2.11
VPS13A-208ENST00000423463 UPK2O00526 184 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 TNFSF12O43508 249 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 ATG12O94817 140 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 KBTBD11O94819 623 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 CTSDP07339 412 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-208ENST00000423463 SAA1P0DJI8 122 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-208ENST00000423463 PGAM2P15259 253 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 RPA2P15927 270 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 PSMB8P28062 276 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 FAUP35544 74 aaKnown RBP1.89□□□□□ -2.11
VPS13A-208ENST00000423463 AP3S2P59780 193 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 ERVK-16P61578 105 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 RPL8P62917 257 aaKnown RBP1.89□□□□□ -2.11
VPS13A-208ENST00000423463 RUNX1Q01196 453 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 PJVKQ0ZLH3 352 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 KIAA0141Q14154 515 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-208ENST00000423463 TNXAQ16473 311 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 ECSCRQ19T08 205 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 PYDC2Q56P42 97 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 OR2B11Q5JQS5 317 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 SPANXN2Q5MJ10 180 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 COX8CQ7Z4L0 72 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 SLC25A42Q86VD7 318 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 GDPD1Q8N9F7 314 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 CCDC71LQ8N9Z2 235 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 OR51H1Q8NH63 302 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 GRPEL2Q8TAA5 225 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 VGLL1Q99990 258 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 FXYD6Q9H0Q3 95 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 C5orf66Q9H5L9 145 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF430Q9H8G1 570 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-208ENST00000423463 BATF3Q9NR55 127 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 SCP2D1Q9UJQ7 156 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 VSIG4Q9Y279 399 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 FBXO7Q9Y3I1 522 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 V9GYH0 126 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 NOTCH3Q9UM47 2321 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 A0A087X0K7 114 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 A0A0G2JLM5 398 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 NDUFAF8A1L188 74 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 KRTAP16-1A8MUX0 517 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 RAMP3O60896 148 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 SNAPC5O75971 98 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 SERPINE2P07093 398 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 OR9G9P0C7N8 305 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 HLA-GP17693 338 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 RPL27AP46776 148 aaKnown RBP1.89□□□□□ -2.11
VPS13A-208ENST00000423463 PIGPP57054 158 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 NDPQ00604 133 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 DHODHQ02127 395 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF45Q02386 682 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 KLK9Q2XQG4 91 aa1.89□□□□□ -2.11
VPS13A-208ENST00000423463 SCGB2B2Q4G0G5 96 aa1.89□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms