RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 TMEM88Q6PEY1 159 aa13.64□□□□□ -0.23
PTPRC-206ENST00000413409 TMEM144Q7Z5S9 345 aa13.64□□□□□ -0.23
PTPRC-206ENST00000413409 PNKDQ8N490 385 aa13.64□□□□□ -0.23
PTPRC-206ENST00000413409 RNASEH2CQ8TDP1 164 aaKnown RBP13.64□□□□□ -0.23
PTPRC-206ENST00000413409 CACNG8Q8WXS5 425 aa13.64□□□□□ -0.23
PTPRC-206ENST00000413409 DUX5Q96PT3 197 aa13.64□□□□□ -0.23
PTPRC-206ENST00000413409 A0A1W2PPI3 338 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 C7orf77A4D0Y5 90 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 M0R036 132 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 PSMB3P49720 205 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 SUB1P53999 127 aaKnown RBP eCLIP13.63□□□□□ -0.23
PTPRC-206ENST00000413409 CD69Q07108 199 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 HNF4GQ14541 408 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 PRSS8Q16651 343 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 MRGPRG-AS1Q2M3A8 158 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 FAM90A2PQ658T7 463 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 SLC35E3Q7Z769 313 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 C17orf50Q8WW18 174 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 TUBA4BQ9H853 241 aa13.63□□□□□ -0.23
PTPRC-206ENST00000413409 TRAV20A0A0B4J274 112 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 CGB1A6NKQ9 187 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 ENSAO43768 121 aaKnown RBP13.62□□□□□ -0.23
PTPRC-206ENST00000413409 IGHV2-5P01817 119 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 OPN1MWP04001 364 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 OPN1MW2P0DN77 364 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 OPN1MW3P0DN78 364 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 CEACAM3P40198 252 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 B2MP61769 119 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 PRR20EP86478 221 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 PRR20CP86479 221 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 PRR20DP86480 221 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 PRR20BP86481 221 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 PRR20AP86496 221 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 PSG5Q15238 335 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 MIC13Q5XKP0 118 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 MOB3BQ86TA1 216 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 C1QL4Q86Z23 238 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 C15orf54Q8N8G6 183 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 ZNF114Q8NC26 417 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 SLC35E1Q96K37 410 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 NIPSNAP3BQ9BS92 247 aa13.62□□□□□ -0.23
PTPRC-206ENST00000413409 TMEM250H0YL14 139 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 H3BQ15 152 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 SNRNP70P08621 437 aaKnown RBP13.61□□□□□ -0.23
PTPRC-206ENST00000413409 HTR1DP28221 377 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 MEF2BQ02080 365 aaPredicted RBP13.61□□□□□ -0.23
PTPRC-206ENST00000413409 PVRIGQ6DKI7 326 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 SLC16A13Q7RTY0 426 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 STPG3Q8N7X2 389 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 OR10W1Q8NGF6 305 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 RPS10P5Q9NQ39 176 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 TPSG1Q9NRR2 321 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 DPM3Q9P2X0 92 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 SIGLEC9Q9Y336 463 aa13.61□□□□□ -0.23
PTPRC-206ENST00000413409 A0A087WWC5 75 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 IGHV3-72A0A0B4J1Y9 119 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 LOC105371267A0A1B0GV96 52 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 A0A1W2PPV4 95 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 OOSP1A8MZH6 123 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 STAG3L2P0CL84 134 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 STAG3L3P0CL85 134 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 ATF4P18848 351 aaPredicted RBP13.6□□□□□ -0.23
PTPRC-206ENST00000413409 RPL27AP46776 148 aaKnown RBP13.6□□□□□ -0.23
PTPRC-206ENST00000413409 DLX1P56177 255 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 WT1-ASQ06250 92 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 PNRC1Q12796 327 aaPredicted RBP13.6□□□□□ -0.23
PTPRC-206ENST00000413409 HABP2Q14520 560 aaPredicted RBP13.6□□□□□ -0.23
PTPRC-206ENST00000413409 C10orf55Q5SWW7 151 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 HCP5Q6MZN7 132 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 TEX29Q8N6K0 151 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 SIGLECL1Q8N7X8 197 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 TVP23CQ96ET8 276 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 SLC45A2Q9UMX9 530 aa13.6□□□□□ -0.23
PTPRC-206ENST00000413409 PUS1Q9Y606 427 aaKnown RBP eCLIP13.6□□□□□ -0.23
PTPRC-206ENST00000413409 TSPAN9O75954 239 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 FSHBP01225 129 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 FBP1P09467 338 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 CD81P60033 236 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 ARF6P62330 175 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 RHOBP62745 196 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 PAX2Q02962 417 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 GCSAMLQ5JQS6 135 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 RITA1Q96K30 269 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 TXNDC17Q9BRA2 123 aa13.59□□□□□ -0.23
PTPRC-206ENST00000413409 SRSF8Q9BRL6 282 aaKnown RBP13.59□□□□□ -0.23
PTPRC-206ENST00000413409 IGLC7A0M8Q6 106 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 DNAJC9-AS1A6NH13 148 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 B4DEV8 164 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 E7EUB6 86 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 ACTL6BO94805 426 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 GAMTQ14353 236 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 MINOS1Q5TGZ0 78 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 NANPQ8TBE9 248 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 SSMEM1Q8WWF3 244 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 CFHR4Q92496 578 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 SIRT7Q9NRC8 400 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 METTL1Q9UBP6 276 aaKnown RBP13.58□□□□□ -0.24
PTPRC-206ENST00000413409 MINOS1-NBL1R4GNA1 71 aa13.58□□□□□ -0.24
PTPRC-206ENST00000413409 TIMM23O14925 209 aa13.57□□□□□ -0.24
PTPRC-206ENST00000413409 HMGB3O15347 200 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms