RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 F8VWA3 439 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 M0R1W7 72 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 GRNP28799 593 aaKnown RBP7.07□□□□□ -1.28
SYNE1-211ENST00000413186 MORN2Q502X0 79 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 GAFA1Q96PS6 74 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 TNFRSF19Q9NS68 423 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 MARCH11A6NNE9 402 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 LAMTOR1Q6IAA8 161 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 OR10W1Q8NGF6 305 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 TXNDC17Q9BRA2 123 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 OR5AC2Q9NZP5 309 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 IGKV1D-17A0A075B6S4 117 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 OOSP1A8MZH6 123 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 KBTBD11O94819 623 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 NDUFC2O95298 119 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 LMO1P25800 156 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 KHDC3LQ587J8 217 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 UFC1Q9Y3C8 167 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 PCNX3Q9H6A9 2034 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 MFSD2BA6NFX1 497 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 GATA3P23771 443 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 HSPE1P61604 102 aaKnown RBP7.07□□□□□ -1.28
SYNE1-211ENST00000413186 Q6ZS49 121 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 Q6ZSR3 168 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 SELENOHQ8IZQ5 122 aaKnown RBP7.07□□□□□ -1.28
SYNE1-211ENST00000413186 OR5A1Q8NGJ0 315 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 VN1R17PQ8TDU5 208 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 PRR13Q9NZ81 148 aa7.07□□□□□ -1.28
SYNE1-211ENST00000413186 COX7A2P2O60397 106 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 UCP1P25874 307 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 PMCHL1Q16048 86 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 ZNF383Q8NA42 475 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 LINC00052Q96N35 136 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 F11RQ9Y624 299 aaKnown RBP7.06□□□□□ -1.28
SYNE1-211ENST00000413186 CLDN34H7C241 214 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 RBP4P02753 201 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 OR10G4Q8NGN3 311 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 OR10G9Q8NGN4 311 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 OR10G7Q8NGN6 311 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 BPESC1Q9GZL8 116 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 JMJD8Q96S16 334 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 RTBDNQ9BSG5 229 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-211ENST00000413186 VAX2Q9UIW0 290 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 RBFOX2O43251 390 aaKnown RBP eCLIP7.06□□□□□ -1.28
SYNE1-211ENST00000413186 ATP6V0CP27449 155 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 ERVK11-1P61568 191 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 RPL39P5Q59GN2 51 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 MEIG1Q5JSS6 88 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 TEX36Q5VZQ5 186 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 ZNF525Q8N782 197 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 LRTM2Q8N967 370 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 SLC25A22Q9H936 323 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 TMEM167BQ9NRX6 74 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 NAGKQ9UJ70 344 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 KMT2EQ8IZD2 1858 aa7.06□□□□□ -1.28
SYNE1-211ENST00000413186 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.06□□□□□ -1.28
SYNE1-211ENST00000413186 SELLP14151 372 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 TMEM241Q24JQ0 296 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 MINOS1Q5TGZ0 78 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 TMEM200BQ69YZ2 307 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 LHFPL1Q86WI0 220 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 SMIM8Q96KF7 97 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 WDR61Q9GZS3 305 aaKnown RBP7.05□□□□□ -1.28
SYNE1-211ENST00000413186 RETNQ9HD89 108 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 MINOS1-NBL1R4GNA1 71 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 NOTCH2Q04721 2471 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 MED12LQ86YW9 2145 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 TRANK1O15050 2925 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 CTXND1A0A1B0GTU2 59 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 S1PR2O95136 353 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 IGHV1-8P0DP01 117 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 ECSCRQ19T08 205 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 SPINK9Q5DT21 86 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 ZNF880Q6PDB4 577 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 WFDC11Q8NEX6 87 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 TLNRD1Q9H1K6 362 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 EML6Q6ZMW3 1958 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 CHD8Q9HCK8 2581 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 TRAV12-3A0A0B4J271 114 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 ITGB1BP1O14713 200 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 ZNF737O75373 536 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 CFDP00746 253 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-211ENST00000413186 FCGR2BP31994 310 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-211ENST00000413186 FAM3BP58499 235 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-211ENST00000413186 DNLZQ5SXM8 178 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 OR2T6Q8NHC8 308 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 TMEM204Q9BSN7 226 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 NCOA6Q14686 2063 aaPredicted RBP7.05□□□□□ -1.28
SYNE1-211ENST00000413186 MOSP00540 346 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 CNN1P51911 297 aaKnown RBP7.05□□□□□ -1.28
SYNE1-211ENST00000413186 PKIAP61925 76 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 LINC01356Q8N9X3 169 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 Q8WTZ3 238 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 QTRT1Q9BXR0 403 aaKnown RBP7.05□□□□□ -1.28
SYNE1-211ENST00000413186 TMEM56-RWDD3S4R434 201 aa7.05□□□□□ -1.28
SYNE1-211ENST00000413186 TFF1P04155 84 aa7.04□□□□□ -1.28
SYNE1-211ENST00000413186 SOD3P08294 240 aa7.04□□□□□ -1.28
SYNE1-211ENST00000413186 RNF144BQ7Z419 303 aa7.04□□□□□ -1.28
SYNE1-211ENST00000413186 CDK2AP2O75956 126 aa7.04□□□□□ -1.28
SYNE1-211ENST00000413186 LY6HO94772 140 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms