RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 ETV3LQ6ZN32 361 aa7.09□□□□□ -1.27
VPS53-203ENST00000401468 KLHL30-AS1Q8NEE0 82 aa7.09□□□□□ -1.27
VPS53-203ENST00000401468 SLC24A4Q8NFF2 622 aa7.09□□□□□ -1.27
VPS53-203ENST00000401468 RNASEH2CQ8TDP1 164 aaKnown RBP7.09□□□□□ -1.27
VPS53-203ENST00000401468 VN1R17PQ8TDU5 208 aa7.09□□□□□ -1.27
VPS53-203ENST00000401468 RAB40CQ96S21 281 aa7.09□□□□□ -1.27
VPS53-203ENST00000401468 HINT2Q9BX68 163 aa7.09□□□□□ -1.27
VPS53-203ENST00000401468 KRTAP4-9Q9BYQ8 210 aa7.09□□□□□ -1.27
VPS53-203ENST00000401468 ZNF436Q9C0F3 470 aaPredicted RBP7.09□□□□□ -1.27
VPS53-203ENST00000401468 HIPK2Q9H2X6 1198 aa7.09□□□□□ -1.27
VPS53-203ENST00000401468 HEYLQ9NQ87 328 aaPredicted RBP7.09□□□□□ -1.27
VPS53-203ENST00000401468 TSSC4Q9Y5U2 329 aaPredicted RBP7.09□□□□□ -1.27
VPS53-203ENST00000401468 A0A0G2JLM5 398 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 PMS2P5A8MQ11 134 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 FAM25EA8MYX2 175 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 G3V3Q6 166 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 H0YIZ8 118 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 I3L2K1 104 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 I3L521 148 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 CORTO00230 105 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 CYB5BO43169 146 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 TSC22D2O75157 780 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 NXPH3O95157 252 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 PRH1P02810 166 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 TRGV3P03979 118 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 NPY1RP25929 384 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 SUB1P53999 127 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS53-203ENST00000401468 RHOGP84095 191 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 DEFB121Q5J5C9 76 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 FAM209BQ5JX69 171 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 ZNF343Q6P1L6 599 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 TMEM14EPQ6UXP3 125 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 NOXA1Q86UR1 476 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 PPP1R1CQ8WVI7 109 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 C4orf3Q8WVX3 66 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 RNF126Q9BV68 326 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 MAGT1Q9H0U3 335 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 ENY2Q9NPA8 101 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 THYN1Q9P016 225 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 GSKIPQ9P0R6 139 aa7.08□□□□□ -1.28
VPS53-203ENST00000401468 TRAV14DV4A0A0A6YYC5 116 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 NPIPB6E9PJ23 425 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 SSSCA1O60232 199 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 NDUFB8O95169 186 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 MPC2O95563 127 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 DEFA4P12838 97 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 SNCAP37840 140 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 TPPP2P59282 170 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 RAP2BP61225 183 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 FHL3Q13643 280 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 EXOSC2Q13868 293 aaKnown RBP7.07□□□□□ -1.28
VPS53-203ENST00000401468 C15orf32Q32M92 178 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 TMEM65Q6PI78 240 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 CXorf58Q96LI9 332 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 CCDC140Q96MF4 163 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 OR5B12Q96R08 314 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 OR4C12Q96R67 309 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 FNDC4Q9H6D8 234 aaPredicted RBP7.07□□□□□ -1.28
VPS53-203ENST00000401468 LYRM2Q9NU23 88 aaPredicted RBP7.07□□□□□ -1.28
VPS53-203ENST00000401468 FBXL7Q9UJT9 491 aa7.07□□□□□ -1.28
VPS53-203ENST00000401468 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.06□□□□□ -1.28
VPS53-203ENST00000401468 TRBV7-1A0A0A6YYK4 115 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 MFSD2BA6NFX1 497 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 FNDC10F2Z333 226 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 WRBO00258 174 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 OR2J3O76001 311 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 LGALS1P09382 135 aaKnown RBP7.06□□□□□ -1.28
VPS53-203ENST00000401468 PET100P0DJ07 73 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 IAPPP10997 89 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 GPX4P36969 197 aaPredicted RBP7.06□□□□□ -1.28
VPS53-203ENST00000401468 RPP30P78346 268 aaKnown RBP7.06□□□□□ -1.28
VPS53-203ENST00000401468 PRSS54Q6PEW0 395 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 LINC00482Q8N8I6 264 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 ZNF502Q8TBZ5 544 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 CACNG8Q8WXS5 425 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 ZNF414Q96IQ9 312 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 MS4A10Q96PG2 267 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 TXN2Q99757 166 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 GNB4Q9HAV0 340 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 PSENENQ9NZ42 101 aa7.06□□□□□ -1.28
VPS53-203ENST00000401468 E5RGE8 158 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 SCAF4O95104 1147 aaKnown RBP7.05□□□□□ -1.28
VPS53-203ENST00000401468 SCGB1D2O95969 90 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 MT-CO2P00403 227 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 IFNA10P01566 189 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 SLC25A4P12235 298 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 PVALBP20472 110 aaPredicted RBP7.05□□□□□ -1.28
VPS53-203ENST00000401468 P2RY1P47900 373 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 DEFA5Q01523 94 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 ATP5G2Q06055 141 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 CD69Q07108 199 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 FGL1Q08830 312 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 SLC25A24Q6NUK1 477 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 TMEM116Q8NCL8 245 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 OR4X1Q8NH49 305 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 SCARB1Q8WTV0 552 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 EEF1AKMT3Q96AZ1 226 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 RAX2Q96IS3 184 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 ST6GAL2Q96JF0 529 aa7.05□□□□□ -1.28
VPS53-203ENST00000401468 ZNF355PQ9NSJ1 428 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms