RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 ZXDCQ2QGD7 858 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-209ENST00000367257 ACTL10Q5JWF8 245 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 S100A7L2Q5SY68 101 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 SLC22A18ASQ8N1D0 253 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 C21orf62Q9NYP8 219 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 ATG2AQ2TAZ0 1938 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 PTPRSQ13332 1948 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 FABP5P3A8MUU1 101 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 CCL25O15444 150 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 MNX1P50219 401 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-209ENST00000367257 CRYBA4P53673 196 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 MBNL2Q5VZF2 373 aaKnown RBP7.5□□□□□ -1.21
SYNE1-209ENST00000367257 C11orf68Q9H3H3 251 aaKnown RBP7.5□□□□□ -1.21
SYNE1-209ENST00000367257 PILRBQ9UKJ0 227 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 CHD5Q8TDI0 1954 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 SUMO2P61956 95 aaKnown RBP7.5□□□□□ -1.21
SYNE1-209ENST00000367257 EGR4Q05215 589 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 SRSF1Q07955 248 aaKnown RBP eCLIP7.5□□□□□ -1.21
SYNE1-209ENST00000367257 WFDC3Q8IUB2 231 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 NAA38Q9BRA0 125 aaKnown RBP7.5□□□□□ -1.21
SYNE1-209ENST00000367257 RP1P56715 2156 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 OOSP1A8MZH6 123 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 C12orf77C9JDV5 145 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 UPK2O00526 184 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 CNTFRP26992 372 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 LY6G6FQ5SQ64 297 aa7.5□□□□□ -1.21
SYNE1-209ENST00000367257 PRUNE2Q8WUY3 3088 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-209ENST00000367257 C15orf61A6NNL5 157 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 FNDC10F2Z333 226 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 DPM2O94777 84 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 FOXL1Q12952 345 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 CT83Q5H943 113 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 LINC01551Q86U37 167 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 RTN4RQ9BZR6 473 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 SCN1AP35498 2009 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 MYO7AQ13402 2215 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 IGHV2OR16-5A0A0B4J2B6 119 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 MOSP00540 346 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 AGMATQ9BSE5 352 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 TRGV11A0A075B6L2 103 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 NKX2-8O15522 239 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 ID3Q02535 119 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 PSG3Q16557 428 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 ARPC1AQ92747 370 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 MGST2Q99735 147 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 C1orf43Q9BWL3 253 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 SRXN1Q9BYN0 137 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 ABCA1O95477 2261 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 IGLV3-12A0A075B6K2 115 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 TRAV26-1A0A087WT03 109 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 TRAV8-1A0A0A6YYK1 113 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 TRAV8-6A0A0B4J262 113 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 A0A1W2PR77 199 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 A0A1W2PRD5 423 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 A0A1W2PRF3 423 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 A0A1W2PRM7 423 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 SHISA3A0PJX4 238 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 OVOL1O14753 267 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 SLC25A20O43772 301 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 SPRED2Q7Z698 418 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 RNF126Q9BV68 326 aa7.49□□□□□ -1.21
SYNE1-209ENST00000367257 EFEMP2O95967 443 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 THY1P04216 161 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 KIR3DS1Q14943 382 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 TMEM170BQ5T4T1 132 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 TRAV21A0A0B4J279 112 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 FAM231BA6NCW3 169 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 TMEM8BA6NDV4 472 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 IFITM1P13164 125 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 ERVK11-1P61568 191 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 C10orf91Q5T1B1 145 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 WDR82Q6UXN9 313 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 SLC25A48Q6ZT89 311 aaKnown RBP7.48□□□□□ -1.21
SYNE1-209ENST00000367257 KIR3DL3Q8N743 410 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 ZIC4Q8N9L1 334 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 MBNL3Q9NUK0 354 aaKnown RBP7.48□□□□□ -1.21
SYNE1-209ENST00000367257 TMEM160Q9NX00 188 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 F5P12259 2224 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 MCM3APO60318 1980 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 IGHV2-70DA0A0C4DH43 119 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 FAM181BA6NEQ2 426 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 PLNP26678 52 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 IFI27P40305 119 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-209ENST00000367257 TMEM256Q8N2U0 113 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 TSKUQ8WUA8 353 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 EDA2RQ9HAV5 297 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 BEX4Q9NWD9 120 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-209ENST00000367257 KLF12Q9Y4X4 402 aa7.48□□□□□ -1.21
SYNE1-209ENST00000367257 TCRBV4S1A1TA0A5B7 111 aa7.47□□□□□ -1.21
SYNE1-209ENST00000367257 PRSS53Q2L4Q9 553 aa7.47□□□□□ -1.21
SYNE1-209ENST00000367257 OR5AN1Q8NGI8 311 aa7.47□□□□□ -1.21
SYNE1-209ENST00000367257 ZNF71Q9NQZ8 489 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-209ENST00000367257 WDR83OSQ9Y284 106 aa7.47□□□□□ -1.21
SYNE1-209ENST00000367257 SELENOKQ9Y6D0 94 aa7.47□□□□□ -1.21
SYNE1-209ENST00000367257 CHCHD2Q9Y6H1 151 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-209ENST00000367257 TRAV24A0A0B4J272 114 aa7.47□□□□□ -1.21
SYNE1-209ENST00000367257 K7EP34 96 aa7.47□□□□□ -1.21
SYNE1-209ENST00000367257 HOXA3O43365 443 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-209ENST00000367257 OR9G9P0C7N8 305 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms