RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 FXYD2P54710 66 aa3.4□□□□□ -1.86
NEDD4-201ENST00000338963 ZNF77Q15935 545 aa3.4□□□□□ -1.86
NEDD4-201ENST00000338963 ARL17AQ8IVW1 177 aa3.4□□□□□ -1.86
NEDD4-201ENST00000338963 PRR7Q8TB68 274 aa3.4□□□□□ -1.86
NEDD4-201ENST00000338963 SCAMP4Q969E2 229 aa3.4□□□□□ -1.86
NEDD4-201ENST00000338963 LTBP4Q8N2S1 1624 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 TMED7-TICAM2A0A0A6YYA0 188 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-201ENST00000338963 MRPS36P82909 103 aaKnown RBP3.4□□□□□ -1.87
NEDD4-201ENST00000338963 TMEM52BQ4KMG9 183 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 Q6ZSR3 168 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 ABHD12Q8N2K0 398 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 GJC3Q8NFK1 279 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 LINC01600Q96MT4 127 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 PILRAQ9UKJ1 303 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 IGKV1D-8A0A087WSZ0 117 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 H3BT86 120 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 ZIC3O60481 467 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 SPRNQ5BIV9 151 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 ASCL5Q7RTU5 278 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 IGFBPL1Q8WX77 278 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 TIMM8BQ9Y5J9 83 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-201ENST00000338963 COL11A2P13942 1736 aaPredicted RBP3.4□□□□□ -1.87
NEDD4-201ENST00000338963 SLC25A20O43772 301 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 HLA-DMBP28068 263 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 FOXC1Q12948 553 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 DIAPH2-AS1Q14236 149 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 TMEM196Q5HYL7 178 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 C1orf53Q5VUE5 145 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 FMC1Q96HJ9 113 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 C21orf62Q9NYP8 219 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 CROCCQ5TZA2 2017 aa3.4□□□□□ -1.87
NEDD4-201ENST00000338963 H3BMM0 161 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 PLNP26678 52 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 RPS27P42677 84 aaKnown RBP3.39□□□□□ -1.87
NEDD4-201ENST00000338963 FXYD3Q14802 87 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 AAED1Q7RTV5 226 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 RNF138Q8WVD3 245 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 UBE2WQ96B02 151 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 TRBV20OR9-2A0A075B6H5 130 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 TRAV8-1A0A0A6YYK1 113 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 H3BVH4 76 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 PRSS1P07477 247 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 IGLC6P0CF74 106 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 LILRA3Q8N6C8 439 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-201ENST00000338963 KLF16Q9BXK1 252 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-201ENST00000338963 AICDAQ9GZX7 198 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 HEYLQ9NQ87 328 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-201ENST00000338963 DLL3Q9NYJ7 618 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 IGF2BP2-AS1Q96M15 143 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 KLF13Q9Y2Y9 288 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-201ENST00000338963 MYH14Q7Z406 1995 aaKnown RBP3.39□□□□□ -1.87
NEDD4-201ENST00000338963 NRXN2Q9P2S2 1712 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-201ENST00000338963 FRG2CA6NGY1 282 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 ZNF157P51786 506 aaPredicted RBP3.39□□□□□ -1.87
NEDD4-201ENST00000338963 IZUMO4Q1ZYL8 232 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 ADAMTSL4Q6UY14 1074 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 LINC00643Q86TS7 51 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 TRBV25-1A0A075B6N4 114 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 CD3EP07766 207 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 LINC00271P0C7V0 271 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 MZT1Q08AG7 82 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 APRG1Q8IVJ8 170 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 UBALD1Q8TB05 177 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 NXT2Q9NPJ8 142 aaKnown RBP3.39□□□□□ -1.87
NEDD4-201ENST00000338963 SCN9AQ15858 1988 aa3.39□□□□□ -1.87
NEDD4-201ENST00000338963 RBP4P02753 201 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 MYF5P13349 255 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 FBXW4P57775 412 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 TFF3Q07654 80 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 SRSF9Q13242 221 aaKnown RBP eCLIP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 PLGLAQ15195 96 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 TREML4Q6UXN2 200 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 ELSPBP1Q96BH3 223 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 PHPT1Q9NRX4 125 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 HIGD1CA8MV81 97 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 GATA4P43694 442 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 ARL16Q0P5N6 197 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 C1orf61Q13536 156 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 VGLL4Q14135 290 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 FAM214BQ7L5A3 538 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 SNRNP40Q96DI7 357 aaKnown RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 GBF1Q92538 1859 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 TRAV13-1A0A0B4J241 112 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 TRAV4A0A0B4J268 109 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 SH2D7A6NKC9 451 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 OVOL1O14753 267 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 GLI4P10075 376 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 RNASE7Q9H1E1 156 aaKnown RBP3.38□□□□□ -1.87
NEDD4-201ENST00000338963 FAM60AQ9NP50 221 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 IGHV3OR15-7A0A075B7D8 119 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 A0A1B0GUT8 65 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 K7ESF4 209 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 PYYP10082 97 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 CYBAP13498 195 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 IL11RAQ14626 422 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 DKK4Q9UBT3 224 aa3.38□□□□□ -1.87
NEDD4-201ENST00000338963 FOXA2Q9Y261 457 aaPredicted RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms