RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 P2RX4Q99571 388 aa14.17□□□□□ -0.14
HMGA1-201ENST00000311487 MED6O75586 246 aa14.16□□□□□ -0.14
HMGA1-201ENST00000311487 IGHV3-11P01762 117 aa14.16□□□□□ -0.14
HMGA1-201ENST00000311487 SEC11BP0C7V7 166 aa14.16□□□□□ -0.14
HMGA1-201ENST00000311487 SNCAP37840 140 aa14.16□□□□□ -0.14
HMGA1-201ENST00000311487 CRIP2P52943 208 aaPredicted RBP14.16□□□□□ -0.14
HMGA1-201ENST00000311487 TPPP2P59282 170 aa14.16□□□□□ -0.14
HMGA1-201ENST00000311487 SLC25A24Q6NUK1 477 aa14.16□□□□□ -0.14
HMGA1-201ENST00000311487 TEX38Q6PEX7 206 aa14.16□□□□□ -0.14
HMGA1-201ENST00000311487 PINX1Q96BK5 328 aaKnown RBP14.16□□□□□ -0.14
HMGA1-201ENST00000311487 RAB40CQ96S21 281 aa14.16□□□□□ -0.14
HMGA1-201ENST00000311487 CITED2Q99967 270 aaPredicted RBP14.16□□□□□ -0.14
HMGA1-201ENST00000311487 RAB19A4D1S5 217 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 IGLV1-40P01703 118 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 IGHG4P01861 327 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 TRGV3P03979 118 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 SPP1P10451 314 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 RAB9AP51151 201 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 ERHP84090 104 aaKnown RBP14.15□□□□□ -0.14
HMGA1-201ENST00000311487 BAXQ07812 192 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 CLINT1Q14677 625 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 PXDC1Q5TGL8 231 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 FAM110DQ8TAY7 271 aaPredicted RBP14.15□□□□□ -0.14
HMGA1-201ENST00000311487 WFDC12Q8WWY7 111 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 MISP3Q96FF7 219 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 HIPK2Q9H2X6 1198 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 CST7O76096 145 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 IFNA10P01566 189 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 PSMB8P28062 276 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 RPL23AP62750 156 aaKnown RBP14.15□□□□□ -0.14
HMGA1-201ENST00000311487 MLANAQ16655 118 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 SPANXN5Q5MJ07 72 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 OR5C1Q8NGR4 320 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 WIPF2Q8TF74 440 aaPredicted RBP14.15□□□□□ -0.14
HMGA1-201ENST00000311487 TMEM170AQ8WVE7 144 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 FANCD2OSQ96PS1 177 aa14.15□□□□□ -0.14
HMGA1-201ENST00000311487 NPIPB5A8MRT5 1133 aa14.14□□□□□ -0.15
HMGA1-201ENST00000311487 SCO1O75880 301 aa14.14□□□□□ -0.15
HMGA1-201ENST00000311487 ZNF266Q14584 549 aa14.14□□□□□ -0.15
HMGA1-201ENST00000311487 PDLIM3Q53GG5 364 aaPredicted RBP14.14□□□□□ -0.15
HMGA1-201ENST00000311487 UQCC3Q6UW78 93 aa14.14□□□□□ -0.15
HMGA1-201ENST00000311487 HSD17B11Q8NBQ5 300 aa14.14□□□□□ -0.15
HMGA1-201ENST00000311487 SH3BGRL3Q9H299 93 aa14.14□□□□□ -0.15
HMGA1-201ENST00000311487 NUDT19A8MXV4 375 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 FAM90A26D6RGX4 464 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 NDUFB8O95169 186 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 CRYGCP07315 174 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 RNASE2P10153 161 aaKnown RBP14.13□□□□□ -0.15
HMGA1-201ENST00000311487 RIPPLY3P57055 190 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 BLOC1S1P78537 153 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 RHOGP84095 191 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 BPIFCQ8NFQ6 507 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 OR4X2Q8NGF9 303 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 F11RQ9Y624 299 aaKnown RBP14.13□□□□□ -0.15
HMGA1-201ENST00000311487 TCRBV4S1A1TA0A5B7 111 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 NSUN5P1Q3KNT7 163 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 BTNL8Q6UX41 500 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 IL34Q6ZMJ4 242 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 TMEM217Q8N7C4 229 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 SLC24A4Q8NFF2 622 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 HRH4Q9H3N8 390 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 PSENENQ9NZ42 101 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 FBXL7Q9UJT9 491 aa14.13□□□□□ -0.15
HMGA1-201ENST00000311487 C12orf54Q6X4T0 127 aa14.12□□□□□ -0.15
HMGA1-201ENST00000311487 Q6ZRG5 221 aa14.12□□□□□ -0.15
HMGA1-201ENST00000311487 LINC00469Q8N7U9 141 aa14.12□□□□□ -0.15
HMGA1-201ENST00000311487 C3orf56Q8N813 242 aa14.12□□□□□ -0.15
HMGA1-201ENST00000311487 TMEM68Q96MH6 324 aa14.12□□□□□ -0.15
HMGA1-201ENST00000311487 DUX3Q96PT4 197 aa14.12□□□□□ -0.15
HMGA1-201ENST00000311487 OR4C12Q96R67 309 aa14.12□□□□□ -0.15
HMGA1-201ENST00000311487 TRRAPQ9Y4A5 3859 aa14.12□□□□□ -0.15
HMGA1-201ENST00000311487 A0A1B0GUS0 222 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 SULT1A1P50225 295 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 FOXE3Q13461 319 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 DEFB136Q30KP8 78 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 C15orf32Q32M92 178 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 STX12Q86Y82 276 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 GNB4Q9HAV0 340 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 IGLV11-55A0A075B6I3 123 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 ATP6V0CP27449 155 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 TAS2R30P59541 319 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 KIAA0141Q14154 515 aaPredicted RBP14.11□□□□□ -0.15
HMGA1-201ENST00000311487 ATP5SQ99766 215 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 SRSF8Q9BRL6 282 aaKnown RBP14.11□□□□□ -0.15
HMGA1-201ENST00000311487 CACFD1Q9UGQ2 172 aa14.11□□□□□ -0.15
HMGA1-201ENST00000311487 C15orf62A8K5M9 175 aa14.1□□□□□ -0.15
HMGA1-201ENST00000311487 NPY1RP25929 384 aa14.1□□□□□ -0.15
HMGA1-201ENST00000311487 SRSF3P84103 164 aaKnown RBP14.1□□□□□ -0.15
HMGA1-201ENST00000311487 OR1P1Q8NH06 330 aa14.1□□□□□ -0.15
HMGA1-201ENST00000311487 LYPD6BQ8NI32 183 aa14.1□□□□□ -0.15
HMGA1-201ENST00000311487 ZNF580Q9UK33 172 aa14.1□□□□□ -0.15
HMGA1-201ENST00000311487 IFNA4P05014 189 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 ELANEP08246 267 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 MRPL41Q8IXM3 137 aaKnown RBP14.09□□□□□ -0.15
HMGA1-201ENST00000311487 RFNGQ9Y644 331 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 TRBV9A0A0B4J1U6 114 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 TRBV12-3P01733 135 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 METTL15P1P0C7V9 234 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 RAB5CP51148 216 aa14.09□□□□□ -0.15
HMGA1-201ENST00000311487 AKR1C1Q04828 323 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms