RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 IGKV1D-33P01593 117 aa11.43□□□□□ -0.58
C9orf3-202ENST00000297979 IGKV1-33P01594 117 aa11.43□□□□□ -0.58
C9orf3-202ENST00000297979 SFTA3P0C7M3 94 aa11.43□□□□□ -0.58
C9orf3-202ENST00000297979 WT1-ASQ06250 92 aa11.43□□□□□ -0.58
C9orf3-202ENST00000297979 FABP9Q0Z7S8 132 aa11.43□□□□□ -0.58
C9orf3-202ENST00000297979 PPP1R27Q86WC6 154 aa11.43□□□□□ -0.58
C9orf3-202ENST00000297979 TBX15Q96SF7 602 aa11.43□□□□□ -0.58
C9orf3-202ENST00000297979 VPS25Q9BRG1 176 aa11.43□□□□□ -0.58
C9orf3-202ENST00000297979 DEFA5Q01523 94 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 TNXAQ16473 311 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 C10orf91Q5T1B1 145 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 ZNF787Q6DD87 383 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 SSX7Q7RTT5 188 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 MRPL41Q8IXM3 137 aaKnown RBP11.42□□□□□ -0.58
C9orf3-202ENST00000297979 RPP25LQ8N5L8 163 aaKnown RBP11.42□□□□□ -0.58
C9orf3-202ENST00000297979 PERPQ96FX8 193 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 MGST2Q99735 147 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 SEC11CQ9BY50 192 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 PGPEP1Q9NXJ5 209 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 CARHSP1Q9Y2V2 147 aaKnown RBP11.42□□□□□ -0.58
C9orf3-202ENST00000297979 TBL2Q9Y4P3 447 aaKnown RBP11.42□□□□□ -0.58
C9orf3-202ENST00000297979 LSM4Q9Y4Z0 139 aaKnown RBP11.42□□□□□ -0.58
C9orf3-202ENST00000297979 MYO18BQ8IUG5 2567 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 IGHV4-61A0A0C4DH41 118 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 RPL27AP46776 148 aaKnown RBP11.42□□□□□ -0.58
C9orf3-202ENST00000297979 LCN15Q6UWW0 184 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 OR10G4Q8NGN3 311 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 OR10G9Q8NGN4 311 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 OR10G7Q8NGN6 311 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 GGTLC1Q9BX51 225 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 FBXL15Q9H469 300 aa11.42□□□□□ -0.58
C9orf3-202ENST00000297979 OPRK1P41145 380 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 UBE2E1P51965 193 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 PYY3Q5JQD4 70 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 TEPPQ6URK8 271 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 PRO1933Q9H354 126 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 KCNIP2Q9NS61 270 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 UBR5O95071 2799 aaPredicted RBP11.41□□□□□ -0.58
C9orf3-202ENST00000297979 MAP1LC3B2A6NCE7 125 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 RBFOX3A6NFN3 312 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 MOSP00540 346 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 OR13C7P0DN81 318 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 SUB1P53999 127 aaKnown RBP eCLIP11.41□□□□□ -0.58
C9orf3-202ENST00000297979 MMDQ15546 238 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 ACOT6Q3I5F7 207 aaPredicted RBP11.41□□□□□ -0.58
C9orf3-202ENST00000297979 NRGNQ92686 78 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 C1orf159Q96HA4 380 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 MAP1LC3BQ9GZQ8 125 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 PAX1P15863 534 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 HIST1H1BP16401 226 aaKnown RBP11.41□□□□□ -0.58
C9orf3-202ENST00000297979 ID1P41134 155 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 PPT1P50897 306 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 PLGLAQ15195 96 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 DYNAPQ8N1N2 210 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 VCX2Q9H322 139 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 SMDT1Q9H4I9 107 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 SLC39A9Q9NUM3 307 aa11.41□□□□□ -0.58
C9orf3-202ENST00000297979 IGHV4-30-2A0A087WSY4 118 aa11.4□□□□□ -0.58
C9orf3-202ENST00000297979 CTXND1A0A1B0GTU2 59 aa11.4□□□□□ -0.58
C9orf3-202ENST00000297979 IGLC7A0M8Q6 106 aa11.4□□□□□ -0.58
C9orf3-202ENST00000297979 C1orf196B1AJZ1 125 aa11.4□□□□□ -0.58
C9orf3-202ENST00000297979 GNB1P62873 340 aa11.4□□□□□ -0.58
C9orf3-202ENST00000297979 CD69Q07108 199 aa11.4□□□□□ -0.58
C9orf3-202ENST00000297979 SVBPQ8N300 66 aa11.4□□□□□ -0.58
C9orf3-202ENST00000297979 RARRES2Q99969 163 aa11.4□□□□□ -0.58
C9orf3-202ENST00000297979 ACTR3CQ9C0K3 210 aaPredicted RBP11.4□□□□□ -0.58
C9orf3-202ENST00000297979 SLC25A22Q9H936 323 aa11.4□□□□□ -0.58
C9orf3-202ENST00000297979 NBR2O15453 112 aa11.4□□□□□ -0.59
C9orf3-202ENST00000297979 RAB5BP61020 215 aa11.4□□□□□ -0.59
C9orf3-202ENST00000297979 RAB31Q13636 194 aa11.4□□□□□ -0.59
C9orf3-202ENST00000297979 HAGHQ16775 308 aa11.4□□□□□ -0.59
C9orf3-202ENST00000297979 LEMD1Q68G75 181 aa11.4□□□□□ -0.59
C9orf3-202ENST00000297979 TMEM88Q6PEY1 159 aa11.4□□□□□ -0.59
C9orf3-202ENST00000297979 EAF1Q96JC9 268 aaPredicted RBP11.4□□□□□ -0.59
C9orf3-202ENST00000297979 P2RX4Q99571 388 aa11.4□□□□□ -0.59
C9orf3-202ENST00000297979 PXMP4Q9Y6I8 212 aa11.4□□□□□ -0.59
C9orf3-202ENST00000297979 HERV-K104P63124 156 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 HES1Q14469 280 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 TMEM144Q7Z5S9 345 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 BOD1L2Q8IYS8 172 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 NPBQ8NG41 125 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 OR2T10Q8NGZ9 312 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 RNASEH2CQ8TDP1 164 aaKnown RBP11.39□□□□□ -0.59
C9orf3-202ENST00000297979 CYB5BO43169 146 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 NDUFA3O95167 84 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 CD24P25063 80 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 DSCR9P59020 149 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 GUCA2BQ16661 112 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 ZNF506Q5JVG8 444 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 MIC13Q5XKP0 118 aa11.39□□□□□ -0.59
C9orf3-202ENST00000297979 K7EP13 123 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 REG1AP05451 166 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 GAMTQ14353 236 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 ZNF114Q8NC26 417 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 MALSU1Q96EH3 234 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 GNG13Q9P2W3 67 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 SSBP2P81877 361 aaPredicted RBP11.38□□□□□ -0.59
C9orf3-202ENST00000297979 PAX8Q06710 450 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 C5orf64Q2M2E5 130 aa11.38□□□□□ -0.59
C9orf3-202ENST00000297979 SSMEM1Q8WWF3 244 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms