RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 DUTP33316 252 aaKnown RBP7.22□□□□□ -1.25
PTCD3-201ENST00000254630 MRPL16Q9NX20 251 aaKnown RBP7.22□□□□□ -1.25
PTCD3-201ENST00000254630 DOCK3Q8IZD9 2030 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 TRAV8-6A0A0B4J262 113 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 PRR32B1ATL7 298 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 OVOL1O14753 267 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 IGHV1-8P0DP01 117 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 EPDR1Q9UM22 224 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 OR11H12B2RN74 326 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 CRPP02741 224 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 SRSF6Q13247 344 aaKnown RBP7.21□□□□□ -1.25
PTCD3-201ENST00000254630 TMEM219Q86XT9 240 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 ORMDL3Q8N138 153 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 OR11H1Q8NG94 326 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 OR11H2Q8NH07 326 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 WFDC12Q8WWY7 111 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 TOMM7Q9P0U1 55 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 NEUROG3Q9Y4Z2 214 aa7.21□□□□□ -1.25
PTCD3-201ENST00000254630 IGHV1-3A0A0C4DH29 117 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 FABP5P3A8MUU1 101 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 CD177Q8N6Q3 437 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 C11orf44Q8N8P7 122 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 BEND2Q8NDZ0 799 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 GAFA1Q96PS6 74 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 CARHSP1Q9Y2V2 147 aaKnown RBP7.21□□□□□ -1.26
PTCD3-201ENST00000254630 TBL2Q9Y4P3 447 aaKnown RBP7.21□□□□□ -1.26
PTCD3-201ENST00000254630 ARID1BQ8NFD5 2236 aaPredicted RBP7.21□□□□□ -1.26
PTCD3-201ENST00000254630 A0A087WWC5 75 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 TRGV4A0A0C4DH28 118 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 HIGD1CA8MV81 97 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 GAS1P54826 345 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 CMC4P56277 68 aaPredicted RBP7.21□□□□□ -1.26
PTCD3-201ENST00000254630 UBE2DNLQ8IWF7 75 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 RNASE7Q9H1E1 156 aaKnown RBP7.21□□□□□ -1.26
PTCD3-201ENST00000254630 IGKV3D-20A0A0C4DH25 116 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 DPRXA6NFQ7 191 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 TSPAN13O95857 204 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 CD55P08174 381 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 PYYP10082 97 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 ADMP35318 185 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 C3orf36Q3SXR2 165 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 MINOS1Q5TGZ0 78 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 ZNF319Q9P2F9 582 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 MINOS1-NBL1R4GNA1 71 aa7.21□□□□□ -1.26
PTCD3-201ENST00000254630 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.2□□□□□ -1.26
PTCD3-201ENST00000254630 M0R1W7 72 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 TMEM50AO95807 157 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 FBLN7Q53RD9 439 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 OR10W1Q8NGF6 305 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 GFI1Q99684 422 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 FBLN5Q9UBX5 448 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 GBF1Q92538 1859 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 EFNA2O43921 213 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 ZNF688P0C7X2 276 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 BTCP35070 178 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 PSMG4Q5JS54 123 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 DTX2Q86UW9 622 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 VGLL1Q99990 258 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 CD33P20138 364 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 ERVK11-1P61568 191 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 LHFPL4Q7Z7J7 247 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 C17orf82Q86X59 251 aaPredicted RBP7.2□□□□□ -1.26
PTCD3-201ENST00000254630 RNF222A6NCQ9 220 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 MPZP25189 248 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 FAM89BQ8N5H3 189 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 LINC01356Q8N9X3 169 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 PGPEP1Q9NXJ5 209 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 C19orf67A6NJJ6 358 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 THADAQ6YHU6 1953 aa7.2□□□□□ -1.26
PTCD3-201ENST00000254630 WFDC1Q9HC57 220 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 PSG8Q9UQ74 426 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 SELENOKQ9Y6D0 94 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 TRBV7-1A0A0A6YYK4 115 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 C1QTNF9BB2RNN3 333 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 DDTP30046 118 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 RNF126Q9BV68 326 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 PARD6GQ9BYG4 376 aaPredicted RBP7.19□□□□□ -1.26
PTCD3-201ENST00000254630 SPAG17Q6Q759 2223 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 IGKV1-27A0A075B6S5 117 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 IFI27P40305 119 aaPredicted RBP7.19□□□□□ -1.26
PTCD3-201ENST00000254630 SLC25A48Q6ZT89 311 aaKnown RBP7.19□□□□□ -1.26
PTCD3-201ENST00000254630 LINC00527Q9UJ94 153 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 EVI2AP22794 236 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 FOXG1P55316 489 aaPredicted RBP7.19□□□□□ -1.26
PTCD3-201ENST00000254630 RPL23P62829 140 aaKnown RBP7.19□□□□□ -1.26
PTCD3-201ENST00000254630 ZNF415Q09FC8 603 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 PNRC2Q9NPJ4 139 aaKnown RBP7.19□□□□□ -1.26
PTCD3-201ENST00000254630 IGKV2-40A0A087WW87 121 aaPredicted RBP7.19□□□□□ -1.26
PTCD3-201ENST00000254630 ZNF98A6NK75 572 aa7.19□□□□□ -1.26
PTCD3-201ENST00000254630 IGKV2D-40P01614 121 aaPredicted RBP7.19□□□□□ -1.26
PTCD3-201ENST00000254630 SRSF1Q07955 248 aaKnown RBP eCLIP7.19□□□□□ -1.26
PTCD3-201ENST00000254630 TMEM8BA6NDV4 472 aa7.18□□□□□ -1.26
PTCD3-201ENST00000254630 FAM223BA6NKX1 122 aa7.18□□□□□ -1.26
PTCD3-201ENST00000254630 B4DSR2 109 aa7.18□□□□□ -1.26
PTCD3-201ENST00000254630 CCL20P78556 96 aa7.18□□□□□ -1.26
PTCD3-201ENST00000254630 NR2C2APQ86WQ0 139 aa7.18□□□□□ -1.26
PTCD3-201ENST00000254630 FAM223AQ8IWN6 122 aa7.18□□□□□ -1.26
PTCD3-201ENST00000254630 MBD3L4A6NDZ8 208 aaPredicted RBP7.18□□□□□ -1.26
PTCD3-201ENST00000254630 MBD3L3A6NE82 208 aaPredicted RBP7.18□□□□□ -1.26
PTCD3-201ENST00000254630 MBD3L5A6NJ08 208 aaPredicted RBP7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms