RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 DBX1A6NMT0 343 aa14.14□□□□□ -0.15
CLN3-262ENST00000637699 OR1P1Q8NH06 330 aa14.14□□□□□ -0.15
CLN3-262ENST00000637699 NXF2Q9GZY0 626 aaKnown RBP14.14□□□□□ -0.15
CLN3-262ENST00000637699 NAA50Q9GZZ1 169 aaKnown RBP14.14□□□□□ -0.15
CLN3-262ENST00000637699 IFT46Q9NQC8 304 aa14.14□□□□□ -0.15
CLN3-262ENST00000637699 EHFQ9NZC4 300 aa14.14□□□□□ -0.15
CLN3-262ENST00000637699 COMMD3Q9UBI1 195 aa14.14□□□□□ -0.15
CLN3-262ENST00000637699 PRNDQ9UKY0 176 aa14.14□□□□□ -0.15
CLN3-262ENST00000637699 ANAPC10Q9UM13 185 aa14.14□□□□□ -0.15
CLN3-262ENST00000637699 PKHD1P08F94 4074 aa14.14□□□□□ -0.15
CLN3-262ENST00000637699 I3L2K1 104 aa14.13□□□□□ -0.15
CLN3-262ENST00000637699 DNASE2O00115 360 aaPredicted RBP14.13□□□□□ -0.15
CLN3-262ENST00000637699 RFX2P48378 723 aa14.13□□□□□ -0.15
CLN3-262ENST00000637699 DEFB131AP59861 70 aa14.13□□□□□ -0.15
CLN3-262ENST00000637699 FKBP11Q9NYL4 201 aa14.13□□□□□ -0.15
CLN3-262ENST00000637699 IGHV3-66A0A0C4DH42 116 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 C15orf61A6NNL5 157 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 C11orf94C9JXX5 98 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 ST8SIA3O43173 380 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 NAT1P18440 290 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 RPL11P62913 178 aaKnown RBP14.12□□□□□ -0.15
CLN3-262ENST00000637699 DHRS11Q6UWP2 260 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 LILRB2Q8N423 598 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 Q8NAQ8 132 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 ST8SIA2Q92186 375 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 TXN2Q99757 166 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 ZNF2Q9BSG1 426 aaPredicted RBP14.12□□□□□ -0.15
CLN3-262ENST00000637699 MS4A6AQ9H2W1 248 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 TMEM14BQ9NUH8 114 aa14.12□□□□□ -0.15
CLN3-262ENST00000637699 GNG7O60262 68 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 DFFBO76075 338 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 MT-CO2P00403 227 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 PMP2P02689 132 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 APOHP02749 345 aaPredicted RBP14.11□□□□□ -0.15
CLN3-262ENST00000637699 PRSS3P35030 304 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 CTF1Q16619 201 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 TOMM20LQ6UXN7 152 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 LYSMD2Q8IV50 215 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 CADM3Q8N126 398 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 FAM24BQ8N5W8 94 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 PINX1Q96BK5 328 aaKnown RBP14.11□□□□□ -0.15
CLN3-262ENST00000637699 MOB3AQ96BX8 217 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 GINS3Q9BRX5 216 aa14.11□□□□□ -0.15
CLN3-262ENST00000637699 DYNC1H1Q14204 4646 aaKnown RBP14.11□□□□□ -0.15
CLN3-262ENST00000637699 IGHV4-28A0A0C4DH34 117 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 HPGDSO60760 199 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 APOA1P02647 267 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 RBMY1A1P0DJD3 496 aaKnown RBP14.1□□□□□ -0.15
CLN3-262ENST00000637699 RBMY1CP0DJD4 496 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 ELK1P19419 428 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 HLA-DMBP28068 263 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 RBMY1FQ15415 496 aaKnown RBP14.1□□□□□ -0.15
CLN3-262ENST00000637699 STHQ8IWL8 128 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 CMTM1Q8IZ96 169 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 TSC22D3Q99576 134 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 FXYD6Q9H0Q3 95 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 HRH4Q9H3N8 390 aa14.1□□□□□ -0.15
CLN3-262ENST00000637699 CD5P06127 495 aa14.09□□□□□ -0.15
CLN3-262ENST00000637699 LINC00336Q6ZUF6 198 aa14.09□□□□□ -0.15
CLN3-262ENST00000637699 GPX8Q8TED1 209 aa14.09□□□□□ -0.15
CLN3-262ENST00000637699 VSIRQ9H7M9 311 aa14.09□□□□□ -0.15
CLN3-262ENST00000637699 GABARAPO95166 117 aa14.08□□□□□ -0.16
CLN3-262ENST00000637699 RORCP51449 518 aa14.08□□□□□ -0.16
CLN3-262ENST00000637699 GPR107Q5VW38 600 aa14.08□□□□□ -0.16
CLN3-262ENST00000637699 Q6ZTC4 211 aa14.08□□□□□ -0.16
CLN3-262ENST00000637699 SNX29P2Q8IUI4 249 aa14.08□□□□□ -0.16
CLN3-262ENST00000637699 DUSP18Q8NEJ0 188 aa14.08□□□□□ -0.16
CLN3-262ENST00000637699 OR5H2Q8NGV7 314 aa14.08□□□□□ -0.16
CLN3-262ENST00000637699 RABAC1Q9UI14 185 aa14.08□□□□□ -0.16
CLN3-262ENST00000637699 AGRNO00468 2067 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 IGHV4-4A0A075B6R2 117 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 TRAV10A0A0B4J240 114 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 SMIM31A0A1B0GVY4 71 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 GPR31O00270 319 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 GIG44P09565 113 aaPredicted RBP14.07□□□□□ -0.16
CLN3-262ENST00000637699 HLA-DMAP28067 261 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 HRH1P35367 487 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 TAS2R46P59540 309 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 PHLDA2Q53GA4 152 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 CENPSQ8N2Z9 138 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 OR4A16Q8NH70 328 aa14.07□□□□□ -0.16
CLN3-262ENST00000637699 PUS1Q9Y606 427 aaKnown RBP eCLIP14.07□□□□□ -0.16
CLN3-262ENST00000637699 DNAH11Q96DT5 4516 aa14.06□□□□□ -0.16
CLN3-262ENST00000637699 H2BFWTQ7Z2G1 175 aa14.06□□□□□ -0.16
CLN3-262ENST00000637699 ZNF114Q8NC26 417 aa14.06□□□□□ -0.16
CLN3-262ENST00000637699 OR6F1Q8NGZ6 308 aa14.06□□□□□ -0.16
CLN3-262ENST00000637699 TRAV2A0A0B4J234 112 aa14.05□□□□□ -0.16
CLN3-262ENST00000637699 A0A1B0GVY2 172 aa14.05□□□□□ -0.16
CLN3-262ENST00000637699 MIFP14174 115 aa14.05□□□□□ -0.16
CLN3-262ENST00000637699 ALDH3B2P48448 385 aa14.05□□□□□ -0.16
CLN3-262ENST00000637699 ERHP84090 104 aaKnown RBP14.05□□□□□ -0.16
CLN3-262ENST00000637699 PRCDQ00LT1 54 aa14.05□□□□□ -0.16
CLN3-262ENST00000637699 ZNF600Q6ZNG1 722 aa14.05□□□□□ -0.16
CLN3-262ENST00000637699 TRPT1Q86TN4 253 aaKnown RBP14.05□□□□□ -0.16
CLN3-262ENST00000637699 SEC22AQ96IW7 307 aa14.05□□□□□ -0.16
CLN3-262ENST00000637699 MRPS26Q9BYN8 205 aaKnown RBP14.05□□□□□ -0.16
CLN3-262ENST00000637699 ZFAND3Q9H8U3 227 aa14.05□□□□□ -0.16
CLN3-262ENST00000637699 SCPEP1Q9HB40 452 aa14.05□□□□□ -0.16
CLN3-262ENST00000637699 ELOA3CA0A087WX78 387 aaPredicted RBP14.04□□□□□ -0.16
CLN3-262ENST00000637699 A0A1B0GU03 582 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms