RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ST8SIA3O43173 380 aa14.63□□□□□ -0.07
CLN3-260ENST00000637578 PTTG1O95997 202 aa14.63□□□□□ -0.07
CLN3-260ENST00000637578 TRAPPC2P0DI81 140 aa14.63□□□□□ -0.07
CLN3-260ENST00000637578 TRAPPC2BP0DI82 140 aa14.63□□□□□ -0.07
CLN3-260ENST00000637578 MITD1Q8WV92 249 aa14.63□□□□□ -0.07
CLN3-260ENST00000637578 MARVELD1Q9BSK0 173 aa14.63□□□□□ -0.07
CLN3-260ENST00000637578 INMT-MINDY4F8WBC2 141 aa14.62□□□□□ -0.07
CLN3-260ENST00000637578 HOXB5P09067 269 aa14.62□□□□□ -0.07
CLN3-260ENST00000637578 HSPE1P61604 102 aaKnown RBP14.62□□□□□ -0.07
CLN3-260ENST00000637578 HSD17B13Q7Z5P4 300 aaPredicted RBP14.62□□□□□ -0.07
CLN3-260ENST00000637578 Q8N1Y9 231 aa14.62□□□□□ -0.07
CLN3-260ENST00000637578 ZNF431Q8TF32 576 aaPredicted RBP14.62□□□□□ -0.07
CLN3-260ENST00000637578 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.62□□□□□ -0.07
CLN3-260ENST00000637578 PEMTQ9UBM1 199 aa14.62□□□□□ -0.07
CLN3-260ENST00000637578 PPP5D1E7EU14 171 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 LGALS9O00182 355 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 GGCTO75223 188 aaKnown RBP14.61□□□□□ -0.07
CLN3-260ENST00000637578 ADAP1O75689 374 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 IL5P05113 134 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 SULT1A3P0DMM9 295 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 SULT1A4P0DMN0 295 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 DEFA4P12838 97 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 WT1-ASQ06250 92 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 AARDQ4LEZ3 155 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 SPINK9Q5DT21 86 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 ADAMTSL5Q6ZMM2 481 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 GPHB5Q86YW7 130 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 TMED3Q9Y3Q3 217 aa14.61□□□□□ -0.07
CLN3-260ENST00000637578 TRBV7-1A0A0A6YYK4 115 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 PRCDQ00LT1 54 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 SMCO1Q147U7 214 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 GGNBP1Q5YKI7 109 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 EEF1AKMT3Q96AZ1 226 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 CXorf58Q96LI9 332 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 OR2C1O95371 312 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 IFNA17P01571 189 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 OR13C7P0DN81 318 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 CLEC19AQ6UXS0 136 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 PDCD10Q9BUL8 212 aa14.6□□□□□ -0.07
CLN3-260ENST00000637578 A0A1B0GU03 582 aa14.59□□□□□ -0.07
CLN3-260ENST00000637578 MFSD2BA6NFX1 497 aa14.59□□□□□ -0.07
CLN3-260ENST00000637578 A8MZ25 164 aa14.59□□□□□ -0.07
CLN3-260ENST00000637578 IGHV3-23P01764 117 aa14.59□□□□□ -0.07
CLN3-260ENST00000637578 ARL3P36405 182 aa14.59□□□□□ -0.07
CLN3-260ENST00000637578 OR2K2Q8NGT1 345 aa14.59□□□□□ -0.07
CLN3-260ENST00000637578 ASCL2Q99929 193 aa14.59□□□□□ -0.07
CLN3-260ENST00000637578 THYN1Q9P016 225 aa14.59□□□□□ -0.07
CLN3-260ENST00000637578 S4R3C0 116 aa14.59□□□□□ -0.07
CLN3-260ENST00000637578 PRAF2O60831 178 aa14.58□□□□□ -0.08
CLN3-260ENST00000637578 NXPH3O95157 252 aa14.58□□□□□ -0.08
CLN3-260ENST00000637578 FRMD6-AS1P0C7T7 363 aa14.58□□□□□ -0.08
CLN3-260ENST00000637578 RGS21Q2M5E4 152 aa14.58□□□□□ -0.08
CLN3-260ENST00000637578 SBSPONQ8IVN8 264 aa14.58□□□□□ -0.08
CLN3-260ENST00000637578 C12orf45Q8N5I9 185 aaPredicted RBP14.58□□□□□ -0.08
CLN3-260ENST00000637578 OR52E5Q8NH55 327 aa14.58□□□□□ -0.08
CLN3-260ENST00000637578 ZNF502Q8TBZ5 544 aa14.58□□□□□ -0.08
CLN3-260ENST00000637578 PLEKHA3Q9HB20 300 aa14.58□□□□□ -0.08
CLN3-260ENST00000637578 U3KQK5 164 aa14.58□□□□□ -0.08
CLN3-260ENST00000637578 MPTX1A8MV57 137 aa14.57□□□□□ -0.08
CLN3-260ENST00000637578 CLEC3BP05452 202 aa14.57□□□□□ -0.08
CLN3-260ENST00000637578 SLC25A6P12236 298 aa14.57□□□□□ -0.08
CLN3-260ENST00000637578 SPCS3P61009 180 aa14.57□□□□□ -0.08
CLN3-260ENST00000637578 LCN12Q6JVE5 192 aa14.57□□□□□ -0.08
CLN3-260ENST00000637578 UXS1Q8NBZ7 420 aa14.57□□□□□ -0.08
CLN3-260ENST00000637578 OR1S1Q8NH92 325 aa14.57□□□□□ -0.08
CLN3-260ENST00000637578 VN1R17PQ8TDU5 208 aa14.57□□□□□ -0.08
CLN3-260ENST00000637578 WWC2-AS2Q96NR7 200 aa14.57□□□□□ -0.08
CLN3-260ENST00000637578 GPN1Q9HCN4 374 aaPredicted RBP14.57□□□□□ -0.08
CLN3-260ENST00000637578 IZUMO1RA6ND01 250 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 C2orf70A6NJV1 201 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 PITX3O75364 302 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 IFNA21P01568 189 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 HOXA1P49639 335 aaPredicted RBP14.56□□□□□ -0.08
CLN3-260ENST00000637578 MFAP2P55001 183 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 C19orf73Q9NVV2 129 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 F11RQ9Y624 299 aaKnown RBP14.56□□□□□ -0.08
CLN3-260ENST00000637578 A8MWP6 167 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 CYB5BO43169 146 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 FOLR2P14207 255 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 TNFRSF9Q07011 255 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 DEFB114Q30KQ6 69 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 OR2C3Q8N628 320 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 HSPB7Q9UBY9 170 aa14.56□□□□□ -0.08
CLN3-260ENST00000637578 HUWE1Q7Z6Z7 4374 aaKnown RBP14.55□□□□□ -0.08
CLN3-260ENST00000637578 SNRPGP15A8MWD9 76 aa14.55□□□□□ -0.08
CLN3-260ENST00000637578 CCSO14618 274 aa14.55□□□□□ -0.08
CLN3-260ENST00000637578 IGHV4-30-4P0DP06 118 aa14.55□□□□□ -0.08
CLN3-260ENST00000637578 FAM106AQ4KMX7 169 aa14.55□□□□□ -0.08
CLN3-260ENST00000637578 ATP6V0BQ99437 205 aa14.55□□□□□ -0.08
CLN3-260ENST00000637578 CEBPZOSA8MTT3 80 aa14.54□□□□□ -0.08
CLN3-260ENST00000637578 INS-IGF2F8WCM5 200 aa14.54□□□□□ -0.08
CLN3-260ENST00000637578 EDN2P20800 178 aa14.54□□□□□ -0.08
CLN3-260ENST00000637578 CD300EQ496F6 205 aaPredicted RBP14.54□□□□□ -0.08
CLN3-260ENST00000637578 SLC25A24Q6NUK1 477 aa14.54□□□□□ -0.08
CLN3-260ENST00000637578 OR10C1Q96KK4 312 aa14.54□□□□□ -0.08
CLN3-260ENST00000637578 ENY2Q9NPA8 101 aa14.54□□□□□ -0.08
CLN3-260ENST00000637578 ZC4H2Q9NQZ6 224 aa14.54□□□□□ -0.08
CLN3-260ENST00000637578 TECRQ9NZ01 308 aaKnown RBP14.54□□□□□ -0.08
CLN3-260ENST00000637578 CACFD1Q9UGQ2 172 aa14.54□□□□□ -0.08
CLN3-260ENST00000637578 TMEM213A2RRL7 107 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms