RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 ZNF436Q9C0F3 470 aaPredicted RBP10.73□□□□□ -0.69
PNKP-223ENST00000629179 TECRQ9NZ01 308 aaKnown RBP10.73□□□□□ -0.69
PNKP-223ENST00000629179 MT-CO2P00403 227 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 ADMP35318 185 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 FAUP35544 74 aaKnown RBP10.72□□□□□ -0.69
PNKP-223ENST00000629179 SNCAP37840 140 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 AP3S2P59780 193 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 TMEM187Q14656 261 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 SPANXN2Q5MJ10 180 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 SPSB3Q6PJ21 355 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 FAM219AQ8IW50 185 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 PINX1Q96BK5 328 aaKnown RBP10.72□□□□□ -0.69
PNKP-223ENST00000629179 PALMDQ9NP74 551 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.72□□□□□ -0.69
PNKP-223ENST00000629179 MLXQ9UH92 298 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 KCNIP3Q9Y2W7 256 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 TMEM56-RWDD3S4R434 201 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 U3KQK5 164 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 TENM3Q9P273 2699 aa10.72□□□□□ -0.69
PNKP-223ENST00000629179 IGHV3OR16-8A0A075B7F1 116 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 INS-IGF2F8WCM5 200 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 CTSGP08311 255 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 HOXA1P49639 335 aaPredicted RBP10.71□□□□□ -0.69
PNKP-223ENST00000629179 MFAP4P55083 255 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 SUPT4H1P63272 117 aaKnown RBP10.71□□□□□ -0.69
PNKP-223ENST00000629179 GUCA2BQ16661 112 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 GTSCR1Q86UQ5 136 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 WDR89Q96FK6 387 aaPredicted RBP10.71□□□□□ -0.69
PNKP-223ENST00000629179 GALNT14Q96FL9 552 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 ATP6V0BQ99437 205 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 SRRQ9GZT4 340 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 ENY2Q9NPA8 101 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 C19orf73Q9NVV2 129 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 CACNG5Q9UF02 275 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 UFC1Q9Y3C8 167 aa10.71□□□□□ -0.69
PNKP-223ENST00000629179 NDUFA4O00483 81 aa10.7□□□□□ -0.7
PNKP-223ENST00000629179 C8orf88P0DMB2 117 aa10.7□□□□□ -0.7
PNKP-223ENST00000629179 RNASE2P10153 161 aaKnown RBP10.7□□□□□ -0.7
PNKP-223ENST00000629179 ELLP55199 621 aaPredicted RBP10.7□□□□□ -0.7
PNKP-223ENST00000629179 CD81P60033 236 aa10.7□□□□□ -0.7
PNKP-223ENST00000629179 SPCS3P61009 180 aa10.7□□□□□ -0.7
PNKP-223ENST00000629179 ZNF57Q68EA5 555 aaPredicted RBP10.7□□□□□ -0.7
PNKP-223ENST00000629179 BTNL8Q6UX41 500 aa10.7□□□□□ -0.7
PNKP-223ENST00000629179 TMEM61Q8N0U2 210 aa10.7□□□□□ -0.7
PNKP-223ENST00000629179 TMEM190Q8WZ59 177 aa10.7□□□□□ -0.7
PNKP-223ENST00000629179 ZNF414Q96IQ9 312 aa10.7□□□□□ -0.7
PNKP-223ENST00000629179 A8MZ25 164 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 ZNF207O43670 478 aaKnown RBP10.69□□□□□ -0.7
PNKP-223ENST00000629179 CD7P09564 240 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 SUB1P53999 127 aaKnown RBP eCLIP10.69□□□□□ -0.7
PNKP-223ENST00000629179 AARDQ4LEZ3 155 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 TMED4Q7Z7H5 227 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 OR52E5Q8NH55 327 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 IL22RA2Q969J5 263 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 MARC2Q969Z3 335 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 TXN2Q99757 166 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 NEURL2Q9BR09 285 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 C20orf24Q9BUV8 137 aa10.69□□□□□ -0.7
PNKP-223ENST00000629179 GAR1Q9NY12 217 aaKnown RBP10.69□□□□□ -0.7
PNKP-223ENST00000629179 MRPL27Q9P0M9 148 aaKnown RBP10.69□□□□□ -0.7
PNKP-223ENST00000629179 NUPL2O15504 423 aaKnown RBP10.68□□□□□ -0.7
PNKP-223ENST00000629179 SCAF4O95104 1147 aaKnown RBP10.68□□□□□ -0.7
PNKP-223ENST00000629179 NXPH3O95157 252 aa10.68□□□□□ -0.7
PNKP-223ENST00000629179 FCGR2BP31994 310 aaPredicted RBP10.68□□□□□ -0.7
PNKP-223ENST00000629179 BAK1Q16611 211 aa10.68□□□□□ -0.7
PNKP-223ENST00000629179 MLANAQ16655 118 aa10.68□□□□□ -0.7
PNKP-223ENST00000629179 PVRIGQ6DKI7 326 aa10.68□□□□□ -0.7
PNKP-223ENST00000629179 LYZL2Q7Z4W2 148 aa10.68□□□□□ -0.7
PNKP-223ENST00000629179 SDHCQ99643 169 aaPredicted RBP10.68□□□□□ -0.7
PNKP-223ENST00000629179 TUBA4BQ9H853 241 aa10.68□□□□□ -0.7
PNKP-223ENST00000629179 DAZ1Q9NQZ3 744 aaKnown RBP10.68□□□□□ -0.7
PNKP-223ENST00000629179 NDUFA13Q9P0J0 144 aa10.68□□□□□ -0.7
PNKP-223ENST00000629179 NBEAL2Q6ZNJ1 2754 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 CEBPZOSA8MTT3 80 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 GNG7O60262 68 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 SULT1A3P0DMM9 295 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 SULT1A4P0DMN0 295 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 BSXQ3C1V8 233 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 TMEM128Q5BJH2 165 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 LGI3Q8N145 548 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 DEFB125Q8N687 156 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 DUSP18Q8NEJ0 188 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 DEDD2Q8WXF8 326 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 WWC2-AS2Q96NR7 200 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 SLC25A21Q9BQT8 299 aaPredicted RBP10.67□□□□□ -0.7
PNKP-223ENST00000629179 WFDC10AQ9H1F0 79 aa10.67□□□□□ -0.7
PNKP-223ENST00000629179 FNDC4Q9H6D8 234 aaPredicted RBP10.67□□□□□ -0.7
PNKP-223ENST00000629179 HEYLQ9NQ87 328 aaPredicted RBP10.67□□□□□ -0.7
PNKP-223ENST00000629179 A0A0B4J2A0 478 aa10.66□□□□□ -0.7
PNKP-223ENST00000629179 LINC00854A0A1B0GVQ3 168 aa10.66□□□□□ -0.7
PNKP-223ENST00000629179 K7EMT4 169 aa10.66□□□□□ -0.7
PNKP-223ENST00000629179 YIF1AO95070 293 aa10.66□□□□□ -0.7
PNKP-223ENST00000629179 ANXA3P12429 323 aa10.66□□□□□ -0.7
PNKP-223ENST00000629179 NPBWR1P48145 328 aa10.66□□□□□ -0.7
PNKP-223ENST00000629179 INPP1P49441 399 aa10.66□□□□□ -0.7
PNKP-223ENST00000629179 CCR6P51684 374 aa10.66□□□□□ -0.7
PNKP-223ENST00000629179 RELQ04864 619 aaPredicted RBP10.66□□□□□ -0.7
PNKP-223ENST00000629179 NMSQ5H8A3 153 aa10.66□□□□□ -0.7
PNKP-223ENST00000629179 RBPMS2Q6ZRY4 209 aaKnown RBP10.66□□□□□ -0.7
PNKP-223ENST00000629179 RCHY1Q96PM5 261 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms