RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	ZNF705E	A8MWA4	302 aa	Predicted RBP	7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	IGHV4-38-2	P0DP08	117 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	TMEM11	P17152	192 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	GNB1	P62873	340 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	WT1-AS	Q06250	92 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	VWC2	Q2TAL6	325 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	KLF17	Q5JT82	389 aa	Predicted RBP	7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	RUSC1-AS1	Q66K80	236 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	SHISA2	Q6UWI4	295 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	OR2G3	Q8NGZ4	309 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	ZNF747	Q9BV97	191 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	GGACT	Q9BVM4	153 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	WDR61	Q9GZS3	305 aa	Known RBP	7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	PFDN2	Q9UHV9	154 aa		7.55	□□□□□ -1.2
PDLIM5-223	ENST00000627587	PRH1	P02810	166 aa		7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	RAB5C	P51148	216 aa		7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	C2orf83	Q53S99	150 aa		7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	PRR31	Q5SQ13	230 aa		7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	BRD3OS	Q6XYD6	125 aa		7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	TMEM182	Q6ZP80	229 aa	Predicted RBP	7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	TAF15	Q92804	592 aa	Known RBP eCLIP	7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	SAT2	Q96F10	170 aa	Predicted RBP	7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	C1RL	Q9NZP8	487 aa		7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	SOX21	Q9Y651	276 aa	Predicted RBP	7.54	□□□□□ -1.2
PDLIM5-223	ENST00000627587	IGLC7	A0M8Q6	106 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	NCBP2L	A6PVI3	153 aa	Known RBP	7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	UMAD1	C9J7I0	102 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	TEX46	H3BTG2	121 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	CNIH1	O95406	144 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	OR13C7	P0DN81	318 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	RNASE2	P10153	161 aa	Known RBP	7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	SUB1	P53999	127 aa	Known RBP eCLIP	7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	BLOC1S1	P78537	153 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	DLK1	P80370	383 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	C5orf64	Q2M2E5	130 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	TUSC1	Q2TAM9	212 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	AWAT1	Q58HT5	328 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	RBMS3	Q6XE24	437 aa	Known RBP	7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	COMMD7	Q86VX2	200 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	SRSF12	Q8WXF0	261 aa	Known RBP	7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	PSMG3	Q9BT73	122 aa	Predicted RBP	7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	RSG1	Q9BU20	258 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	MED9	Q9NWA0	146 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	TENM1	Q9UKZ4	2725 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	SMCO3	A2RU48	225 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	TEX22	C9J3V5	150 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	FGF7	P21781	194 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	FHIT	P49789	147 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	AKR1C8P	Q5T2L2	129 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	PIFO	Q8TCI5	191 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	CITED4	Q96RK1	184 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	FAM96B	Q9Y3D0	163 aa		7.53	□□□□□ -1.2
PDLIM5-223	ENST00000627587	MPDU1	O75352	247 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	CAMLG	P49069	296 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	SERF2	P84101	59 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	ARSJ	Q5FYB0	599 aa	Predicted RBP	7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	PXDC1	Q5TGL8	231 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587		Q6ZRG5	221 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	ZNF709	Q8N972	641 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	SRSF8	Q9BRL6	282 aa	Known RBP	7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	MEGF9	Q9H1U4	602 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	NPVF	Q9HCQ7	196 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	PARP11	Q9NR21	331 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	ZMAT5	Q9UDW3	170 aa	Known RBP	7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	WDR83OS	Q9Y284	106 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	FBXO7	Q9Y3I1	522 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587	TIMM9	Q9Y5J7	89 aa		7.52	□□□□□ -1.21
PDLIM5-223	ENST00000627587		A0A0U1RQK1	487 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	FNDC10	F2Z333	226 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	C17orf112	F2Z3M2	114 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	FBP1	P09467	338 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	AREG	P15514	252 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	S100A1	P23297	94 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	MFAP2	P55001	183 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	ZNF616	Q08AN1	781 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	FXYD3	Q14802	87 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	PVRIG	Q6DKI7	326 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	BTNL8	Q6UX41	500 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	C19orf35	Q6ZS72	473 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	CENPV	Q7Z7K6	275 aa	Predicted RBP	7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	ZNF114	Q8NC26	417 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	LYPD6B	Q8NI32	183 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	RNASEH2C	Q8TDP1	164 aa	Known RBP	7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	P2RX4	Q99571	388 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	NPCDR1	Q9BY65	106 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	DMRT1	Q9Y5R6	373 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	MFSD2B	A6NFX1	497 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	REG1A	P05451	166 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	APELA	P0DMC3	54 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	BPIFB3	P59826	476 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	NDP	Q00604	133 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	AKR1C1	Q04828	323 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	CD69	Q07108	199 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	MLANA	Q16655	118 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	ZNF562	Q6V9R5	426 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	DPPA3	Q6W0C5	159 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587		Q8N9W7	124 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	FAM213B	Q8TBF2	198 aa		7.51	□□□□□ -1.21
PDLIM5-223	ENST00000627587	ABHD5	Q8WTS1	349 aa		7.51	□□□□□ -1.21

Retrieved 100 of 20,778 RNA–protein pairs in 98 ms