RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 TGOLN2O43493 480 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 IGLV1-51P01701 117 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 SPNP16150 400 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 CCR6P51684 374 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 UBE2MP61081 183 aaKnown RBP14.78□□□□□ -0.04
UPF1-212ENST00000601689 SPINK9Q5DT21 86 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 OR2K2Q8NGT1 345 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 LHFPL5Q8TAF8 219 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 PINX1Q96BK5 328 aaKnown RBP14.78□□□□□ -0.04
UPF1-212ENST00000601689 GPR146Q96CH1 333 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 TXN2Q99757 166 aa14.78□□□□□ -0.04
UPF1-212ENST00000601689 HLA-AP01891 365 aaKnown RBP14.77□□□□□ -0.05
UPF1-212ENST00000601689 IL7P13232 177 aa14.77□□□□□ -0.05
UPF1-212ENST00000601689 HTR2BP41595 481 aa14.77□□□□□ -0.05
UPF1-212ENST00000601689 RELQ04864 619 aaPredicted RBP14.77□□□□□ -0.05
UPF1-212ENST00000601689 DUSP18Q8NEJ0 188 aa14.77□□□□□ -0.05
UPF1-212ENST00000601689 HEYLQ9NQ87 328 aaPredicted RBP14.77□□□□□ -0.05
UPF1-212ENST00000601689 BATF3Q9NR55 127 aa14.77□□□□□ -0.05
UPF1-212ENST00000601689 UFC1Q9Y3C8 167 aa14.77□□□□□ -0.05
UPF1-212ENST00000601689 A0A0G2JRQ6 117 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 OR2T8A6NH00 312 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 CSN3P07498 182 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 NPBWR1P48145 328 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 CD69Q07108 199 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 SMCO1Q147U7 214 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 CCDC32Q9BV29 185 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 ZC4H2Q9NQZ6 224 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 TECRQ9NZ01 308 aaKnown RBP14.76□□□□□ -0.05
UPF1-212ENST00000601689 DMRT1Q9Y5R6 373 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 SMAD5-AS1Q9Y6J3 95 aa14.76□□□□□ -0.05
UPF1-212ENST00000601689 IGHV3-21A0A0B4J1V1 117 aa14.75□□□□□ -0.05
UPF1-212ENST00000601689 RPS10-NUDT3A0A1W2PQS6 291 aa14.75□□□□□ -0.05
UPF1-212ENST00000601689 GNG7O60262 68 aa14.75□□□□□ -0.05
UPF1-212ENST00000601689 NDUFB6O95139 128 aa14.75□□□□□ -0.05
UPF1-212ENST00000601689 SFT2D2O95562 160 aa14.75□□□□□ -0.05
UPF1-212ENST00000601689 MT-CO2P00403 227 aa14.75□□□□□ -0.05
UPF1-212ENST00000601689 ELLP55199 621 aaPredicted RBP14.75□□□□□ -0.05
UPF1-212ENST00000601689 SUPT4H1P63272 117 aaKnown RBP14.75□□□□□ -0.05
UPF1-212ENST00000601689 GTSCR1Q86UQ5 136 aa14.75□□□□□ -0.05
UPF1-212ENST00000601689 OR1S1Q8NH92 325 aa14.75□□□□□ -0.05
UPF1-212ENST00000601689 MARC2Q969Z3 335 aa14.75□□□□□ -0.05
UPF1-212ENST00000601689 A0A1B0GU03 582 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 C2orf70A6NJV1 201 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 K7EIM0 57 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 FOLR2P14207 255 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 MFAP2P55001 183 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 AARDQ4LEZ3 155 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 Q6ZRM9 215 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 LYZL2Q7Z4W2 148 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 TMED3Q9Y3Q3 217 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 DNAH3Q8TD57 4116 aa14.74□□□□□ -0.05
UPF1-212ENST00000601689 A6NHS1 94 aa14.73□□□□□ -0.05
UPF1-212ENST00000601689 NDUFA4O00483 81 aa14.73□□□□□ -0.05
UPF1-212ENST00000601689 FCGR2BP31994 310 aaPredicted RBP14.73□□□□□ -0.05
UPF1-212ENST00000601689 OPRK1P41145 380 aa14.73□□□□□ -0.05
UPF1-212ENST00000601689 IL34Q6ZMJ4 242 aa14.73□□□□□ -0.05
UPF1-212ENST00000601689 LRTM2Q8N967 370 aa14.73□□□□□ -0.05
UPF1-212ENST00000601689 COQ8AQ8NI60 647 aa14.73□□□□□ -0.05
UPF1-212ENST00000601689 SDHCQ99643 169 aaPredicted RBP14.73□□□□□ -0.05
UPF1-212ENST00000601689 PRR13Q9NZ81 148 aa14.73□□□□□ -0.05
UPF1-212ENST00000601689 A8MWP6 167 aa14.72□□□□□ -0.05
UPF1-212ENST00000601689 I3L2K1 104 aa14.72□□□□□ -0.05
UPF1-212ENST00000601689 MED6O75586 246 aa14.72□□□□□ -0.05
UPF1-212ENST00000601689 CBLN1P23435 193 aa14.72□□□□□ -0.05
UPF1-212ENST00000601689 PPP1R1AQ13522 171 aa14.72□□□□□ -0.05
UPF1-212ENST00000601689 NMSQ5H8A3 153 aa14.72□□□□□ -0.05
UPF1-212ENST00000601689 ETFRF1Q6IPR1 90 aa14.72□□□□□ -0.05
UPF1-212ENST00000601689 HAPLN4Q86UW8 402 aa14.72□□□□□ -0.05
UPF1-212ENST00000601689 SLC24A4Q8NFF2 622 aa14.72□□□□□ -0.05
UPF1-212ENST00000601689 ZNF436Q9C0F3 470 aaPredicted RBP14.72□□□□□ -0.05
UPF1-212ENST00000601689 WDR12Q9GZL7 423 aaKnown RBP14.72□□□□□ -0.05
UPF1-212ENST00000601689 MRPL27Q9P0M9 148 aaKnown RBP14.72□□□□□ -0.05
UPF1-212ENST00000601689 IGHV3-35A0A0C4DH35 117 aa14.71□□□□□ -0.05
UPF1-212ENST00000601689 LYRM1O43325 122 aa14.71□□□□□ -0.05
UPF1-212ENST00000601689 RNASE2P10153 161 aaKnown RBP14.71□□□□□ -0.05
UPF1-212ENST00000601689 SLC25A6P12236 298 aa14.71□□□□□ -0.05
UPF1-212ENST00000601689 TNFRSF9Q07011 255 aa14.71□□□□□ -0.05
UPF1-212ENST00000601689 C4orf46Q504U0 113 aa14.71□□□□□ -0.05
UPF1-212ENST00000601689 B9D2Q9BPU9 175 aa14.71□□□□□ -0.05
UPF1-212ENST00000601689 C20orf24Q9BUV8 137 aa14.71□□□□□ -0.05
UPF1-212ENST00000601689 PTTG2Q9NZH5 202 aa14.71□□□□□ -0.05
UPF1-212ENST00000601689 LSM4Q9Y4Z0 139 aaKnown RBP14.71□□□□□ -0.05
UPF1-212ENST00000601689 U3KQ87 197 aa14.71□□□□□ -0.05
UPF1-212ENST00000601689 YIF1AO95070 293 aa14.7□□□□□ -0.06
UPF1-212ENST00000601689 NXPH3O95157 252 aa14.7□□□□□ -0.06
UPF1-212ENST00000601689 IFNA10P01566 189 aa14.7□□□□□ -0.06
UPF1-212ENST00000601689 IFNA21P01568 189 aa14.7□□□□□ -0.06
UPF1-212ENST00000601689 BMI1P35226 326 aa14.7□□□□□ -0.06
UPF1-212ENST00000601689 ATP5IP56385 69 aaPredicted RBP14.7□□□□□ -0.06
UPF1-212ENST00000601689 MZT2BQ6NZ67 158 aa14.7□□□□□ -0.06
UPF1-212ENST00000601689 UXS1Q8NBZ7 420 aa14.7□□□□□ -0.06
UPF1-212ENST00000601689 RNASEH2CQ8TDP1 164 aaKnown RBP14.7□□□□□ -0.06
UPF1-212ENST00000601689 DAZ1Q9NQZ3 744 aaKnown RBP14.7□□□□□ -0.06
UPF1-212ENST00000601689 PRKDCP78527 4128 aaKnown RBP14.69□□□□□ -0.06
UPF1-212ENST00000601689 TRAV30A0A087WSZ9 112 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 OR4E1P0C645 316 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 NPY1RP25929 384 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 RPP30P78346 268 aaKnown RBP14.69□□□□□ -0.06
UPF1-212ENST00000601689 ZNF846Q147U1 533 aa14.69□□□□□ -0.06
UPF1-212ENST00000601689 DEFB114Q30KQ6 69 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms