RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, human

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM28-215	ENST00000601150	SULT1A3	P0DMM9	295 aa		12.83	□□□□□ -0.36
TRIM28-215	ENST00000601150	SULT1A4	P0DMN0	295 aa		12.83	□□□□□ -0.36
TRIM28-215	ENST00000601150	SPN	P16150	400 aa		12.83	□□□□□ -0.36
TRIM28-215	ENST00000601150	LYZL2	Q7Z4W2	148 aa		12.83	□□□□□ -0.36
TRIM28-215	ENST00000601150	HAPLN4	Q86UW8	402 aa		12.83	□□□□□ -0.36
TRIM28-215	ENST00000601150	ZC4H2	Q9NQZ6	224 aa		12.83	□□□□□ -0.36
TRIM28-215	ENST00000601150	CACFD1	Q9UGQ2	172 aa		12.83	□□□□□ -0.36
TRIM28-215	ENST00000601150	PRKDC	P78527	4128 aa	Known RBP	12.82	□□□□□ -0.36
TRIM28-215	ENST00000601150	OR2T8	A6NH00	312 aa		12.82	□□□□□ -0.36
TRIM28-215	ENST00000601150		I3L2K1	104 aa		12.82	□□□□□ -0.36
TRIM28-215	ENST00000601150	TGOLN2	O43493	480 aa		12.82	□□□□□ -0.36
TRIM28-215	ENST00000601150	SUB1	P53999	127 aa	Known RBP eCLIP	12.82	□□□□□ -0.36	2e-13	■□□□□ 9.9
TRIM28-215	ENST00000601150	UBE2M	P61081	183 aa	Known RBP	12.82	□□□□□ -0.36
TRIM28-215	ENST00000601150	NMS	Q5H8A3	153 aa		12.82	□□□□□ -0.36
TRIM28-215	ENST00000601150	BSCL2	Q96G97	398 aa	Predicted RBP	12.82	□□□□□ -0.36
TRIM28-215	ENST00000601150	GAR1	Q9NY12	217 aa	Known RBP	12.82	□□□□□ -0.36
TRIM28-215	ENST00000601150	DUXB	A0A1W2PPF3	345 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	ZNF320	A2RRD8	509 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	SFT2D2	O95562	160 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	MT-CO2	P00403	227 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	RNASE2	P10153	161 aa	Known RBP	12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	GP9	P14770	177 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	MFAP4	P55083	255 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	PPP1R1A	Q13522	171 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	SMCO1	Q147U7	214 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150		Q56UQ5	140 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	SPSB3	Q6PJ21	355 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	UBAC2	Q8NBM4	344 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	S100Z	Q8WXG8	99 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	PINX1	Q96BK5	328 aa	Known RBP	12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	CCDC32	Q9BV29	185 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	BATF3	Q9NR55	127 aa		12.81	□□□□□ -0.36
TRIM28-215	ENST00000601150	C2orf70	A6NJV1	201 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	CEBPZOS	A8MTT3	80 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150		A8MWP6	167 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150		F8W735	103 aa	Predicted RBP	12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	CORT	O00230	105 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	BTC	P35070	178 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	ANKRD55	Q3KP44	614 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	PVRIG	Q6DKI7	326 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	ADAMTSL5	Q6ZMM2	481 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	LRTM2	Q8N967	370 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	DYNLRB2	Q8TF09	96 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	TXN2	Q99757	166 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	PALMD	Q9NP74	551 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	HEYL	Q9NQ87	328 aa	Predicted RBP	12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	PTTG2	Q9NZH5	202 aa		12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	LSM4	Q9Y4Z0	139 aa	Known RBP	12.8	□□□□□ -0.36
TRIM28-215	ENST00000601150	IGHV3-35	A0A0C4DH35	117 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150		A0A1B0GU03	582 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	PLA2G10	O15496	165 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	FOLR2	P14207	255 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	FCGR2B	P31994	310 aa	Predicted RBP	12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	HTR2B	P41595	481 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	BSX	Q3C1V8	233 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	LCN12	Q6JVE5	192 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	OR2K2	Q8NGT1	345 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	CHRDL1	Q9BU40	450 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	ZNF436	Q9C0F3	470 aa	Predicted RBP	12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	FLVCR2	Q9UPI3	526 aa		12.79	□□□□□ -0.36
TRIM28-215	ENST00000601150	TMEM213	A2RRL7	107 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	NUPL2	O15504	423 aa	Known RBP	12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	LYRM1	O43325	122 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	NXPH3	O95157	252 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	IGHV3-48	P01763	117 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	CBLN1	P23435	193 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	TNFRSF9	Q07011	255 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	UNQ9165/PRO28630	Q6UXU0	137 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	OR1S1	Q8NH92	325 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	HSPB7	Q9UBY9	170 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	UFC1	Q9Y3C8	167 aa		12.78	□□□□□ -0.36
TRIM28-215	ENST00000601150	C9orf170	A2RU37	121 aa		12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	CTSG	P08311	255 aa		12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	EDN2	P20800	178 aa		12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	ADM	P35318	185 aa		12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	ELL	P55199	621 aa	Predicted RBP	12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	DUSP18	Q8NEJ0	188 aa		12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	TMEM190	Q8WZ59	177 aa		12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	MARC2	Q969Z3	335 aa		12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	HIPK2	Q9H2X6	1198 aa		12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	TECR	Q9NZ01	308 aa	Known RBP	12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	TMED3	Q9Y3Q3	217 aa		12.77	□□□□□ -0.37
TRIM28-215	ENST00000601150	NDUFA4	O00483	81 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	GNG7	O60262	68 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	OR4E1	P0C645	316 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	SLC25A6	P12236	298 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	NPBWR1	P48145	328 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	REL	Q04864	619 aa	Predicted RBP	12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	DEFB114	Q30KQ6	69 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	TM4SF20	Q53R12	229 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	C2orf83	Q53S99	150 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	LYG2	Q86SG7	212 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	SLC24A4	Q8NFF2	622 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	CACNG8	Q8WXS5	425 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	B9D2	Q9BPU9	175 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	SMAD5-AS1	Q9Y6J3	95 aa		12.76	□□□□□ -0.37
TRIM28-215	ENST00000601150	IZUMO1R	A6ND01	250 aa		12.75	□□□□□ -0.37
TRIM28-215	ENST00000601150	PITX3	O75364	302 aa		12.75	□□□□□ -0.37
TRIM28-215	ENST00000601150	HOXB5	P09067	269 aa		12.75	□□□□□ -0.37
TRIM28-215	ENST00000601150	ANXA7	P20073	488 aa	Known RBP	12.75	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms