RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 RPL11P62913 178 aaKnown RBP12.98□□□□□ -0.33
SHKBP1-223ENST00000600552 SEC22AQ96IW7 307 aa12.98□□□□□ -0.33
SHKBP1-223ENST00000600552 ATP6V0BQ99437 205 aa12.98□□□□□ -0.33
SHKBP1-223ENST00000600552 MPTX1A8MV57 137 aa12.97□□□□□ -0.33
SHKBP1-223ENST00000600552 RCVRNP35243 200 aa12.97□□□□□ -0.33
SHKBP1-223ENST00000600552 HSPE1P61604 102 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-223ENST00000600552 VBP1P61758 197 aa12.97□□□□□ -0.33
SHKBP1-223ENST00000600552 TCF24Q7RTU0 167 aa12.97□□□□□ -0.33
SHKBP1-223ENST00000600552 TMEM217Q8N7C4 229 aa12.97□□□□□ -0.33
SHKBP1-223ENST00000600552 NXF2Q9GZY0 626 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-223ENST00000600552 CSTL1Q9H114 145 aa12.97□□□□□ -0.33
SHKBP1-223ENST00000600552 DNASE2O00115 360 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 APOA1P02647 267 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 ELK1P19419 428 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 SNCAP37840 140 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 PAFAH1B2P68402 229 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 PRCDQ00LT1 54 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 CADM3Q8N126 398 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 PHLDA1Q8WV24 401 aaPredicted RBP12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 ST8SIA2Q92186 375 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 ZNF414Q96IQ9 312 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 TXN2Q99757 166 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 RARRES2Q99969 163 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 SCPEP1Q9HB40 452 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 FBXL17Q9UF56 701 aa12.96□□□□□ -0.33
SHKBP1-223ENST00000600552 ST8SIA3O43173 380 aa12.95□□□□□ -0.34
SHKBP1-223ENST00000600552 IFNA17P01571 189 aa12.95□□□□□ -0.34
SHKBP1-223ENST00000600552 CMC4P56277 68 aaPredicted RBP12.95□□□□□ -0.34
SHKBP1-223ENST00000600552 TOMM20LQ6UXN7 152 aa12.95□□□□□ -0.34
SHKBP1-223ENST00000600552 SLC35G3Q8N808 338 aa12.95□□□□□ -0.34
SHKBP1-223ENST00000600552 DUSP18Q8NEJ0 188 aa12.95□□□□□ -0.34
SHKBP1-223ENST00000600552 GINS3Q9BRX5 216 aa12.95□□□□□ -0.34
SHKBP1-223ENST00000600552 FUNDC2Q9BWH2 189 aa12.95□□□□□ -0.34
SHKBP1-223ENST00000600552 DEFB4AO15263 64 aa12.94□□□□□ -0.34
SHKBP1-223ENST00000600552 APOHP02749 345 aaPredicted RBP12.94□□□□□ -0.34
SHKBP1-223ENST00000600552 AKR1C2P52895 323 aa12.94□□□□□ -0.34
SHKBP1-223ENST00000600552 UCP3P55916 312 aa12.94□□□□□ -0.34
SHKBP1-223ENST00000600552 NANOS2P60321 138 aaKnown RBP12.94□□□□□ -0.34
SHKBP1-223ENST00000600552 LEMD1Q68G75 181 aa12.94□□□□□ -0.34
SHKBP1-223ENST00000600552 LILRB2Q8N423 598 aa12.94□□□□□ -0.34
SHKBP1-223ENST00000600552 OR11H2Q8NH07 326 aa12.94□□□□□ -0.34
SHKBP1-223ENST00000600552 OR10C1Q96KK4 312 aa12.94□□□□□ -0.34
SHKBP1-223ENST00000600552 DFFBO76075 338 aa12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 TNFAIP8O95379 198 aa12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 ETV6P41212 452 aa12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 NPBWR1P48145 328 aa12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 PPP5CP53041 499 aa12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 PIGPP57054 158 aa12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 TRIM16LQ309B1 348 aa12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 RPP25LQ8N5L8 163 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 RNASE11Q8TAA1 199 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 PDCD10Q9BUL8 212 aa12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 FAM212BQ9NTI7 297 aaPredicted RBP12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 RABAC1Q9UI14 185 aa12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 PUS1Q9Y606 427 aaKnown RBP eCLIP12.93□□□□□ -0.34
SHKBP1-223ENST00000600552 DEDDO75618 318 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 CA1P00915 261 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 IGKV1-5P01602 117 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 HOXA1P49639 335 aaPredicted RBP12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 DEFB131AP59861 70 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 SP6Q3SY56 376 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 RNASE10Q5GAN6 216 aaKnown RBP12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 FAM90A2PQ658T7 463 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 ZNF114Q8NC26 417 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 TP53RKQ96S44 253 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 MS4A6AQ9H2W1 248 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 ENY2Q9NPA8 101 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 KLK11Q9UBX7 282 aa12.92□□□□□ -0.34
SHKBP1-223ENST00000600552 A0A0B4J293 547 aa12.91□□□□□ -0.34
SHKBP1-223ENST00000600552 CD3DP04234 171 aa12.91□□□□□ -0.34
SHKBP1-223ENST00000600552 RORCP51449 518 aa12.91□□□□□ -0.34
SHKBP1-223ENST00000600552 MZT2AQ6P582 158 aa12.91□□□□□ -0.34
SHKBP1-223ENST00000600552 ZNF600Q6ZNG1 722 aa12.91□□□□□ -0.34
SHKBP1-223ENST00000600552 OR52I2Q8NH67 350 aa12.91□□□□□ -0.34
SHKBP1-223ENST00000600552 C11orf45Q8TAV5 145 aa12.91□□□□□ -0.34
SHKBP1-223ENST00000600552 COPZ2Q9P299 210 aa12.91□□□□□ -0.34
SHKBP1-223ENST00000600552 C3orf85A0A1B0GTC6 90 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 TMEM50AO95807 157 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 IFNA4P05014 189 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 SUB1P53999 127 aaKnown RBP eCLIP12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 MLANAQ16655 118 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 SCGB2B2Q4G0G5 96 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 FAM24BQ8N5W8 94 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 STXBP6Q8NFX7 210 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 GATAD1Q8WUU5 269 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 TMEM230Q96A57 120 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 EXTL2Q9UBQ6 330 aa12.9□□□□□ -0.34
SHKBP1-223ENST00000600552 A0A1B0GU03 582 aa12.89□□□□□ -0.35
SHKBP1-223ENST00000600552 ATG12O94817 140 aa12.89□□□□□ -0.35
SHKBP1-223ENST00000600552 ATF4P18848 351 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-223ENST00000600552 NPPCP23582 126 aa12.89□□□□□ -0.35
SHKBP1-223ENST00000600552 OPRK1P41145 380 aa12.89□□□□□ -0.35
SHKBP1-223ENST00000600552 RND3P61587 244 aa12.89□□□□□ -0.35
SHKBP1-223ENST00000600552 RBMS2Q15434 407 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-223ENST00000600552 RRNAD1Q96FB5 475 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-223ENST00000600552 MRPL36Q9P0J6 103 aaKnown RBP12.89□□□□□ -0.35
SHKBP1-223ENST00000600552 RNASE2P10153 161 aaKnown RBP12.88□□□□□ -0.35
SHKBP1-223ENST00000600552 TMEM187Q14656 261 aa12.88□□□□□ -0.35
SHKBP1-223ENST00000600552 STHQ8IWL8 128 aa12.88□□□□□ -0.35
SHKBP1-223ENST00000600552 OR4D10Q8NGI6 311 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms