RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FAM106AQ4KMX7 169 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 SPINK9Q5DT21 86 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 LCN12Q6JVE5 192 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 LINC00299Q6ZSB3 139 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 Q8N1Y9 231 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 LRTM2Q8N967 370 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 RNASE11Q8TAA1 199 aaKnown RBP12.21□□□□□ -0.45
TRIM28-213ENST00000598355 TMEM190Q8WZ59 177 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 PDCD10Q9BUL8 212 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-213ENST00000598355 PRR13Q9NZ81 148 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 SMAD5-AS1Q9Y6J3 95 aa12.21□□□□□ -0.45
TRIM28-213ENST00000598355 DUXBA0A1W2PPF3 345 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 IZUMO1RA6ND01 250 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 NAP1L6A6NFF2 107 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 OR2T8A6NH00 312 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 C8orf88P0DMB2 117 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 IL7P13232 177 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 FOLR2P14207 255 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 TRIQKQ629K1 86 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 ZNF57Q68EA5 555 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-213ENST00000598355 PLET1Q6UQ28 207 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 TXN2Q99757 166 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 CHRDL1Q9BU40 450 aa12.2□□□□□ -0.46
TRIM28-213ENST00000598355 GAR1Q9NY12 217 aaKnown RBP12.2□□□□□ -0.46
TRIM28-213ENST00000598355 IGHV3-21A0A0B4J1V1 117 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 PIGBOS1A0A0B4J2F0 54 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 A6NHS1 94 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 NDUFA4O00483 81 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 MT-CO2P00403 227 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 CTSGP08311 255 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 ANXA3P12429 323 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 CBLN1P23435 193 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 HOXA1P49639 335 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-213ENST00000598355 DEFB114Q30KQ6 69 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 CD300EQ496F6 205 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-213ENST00000598355 TMED4Q7Z7H5 227 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 LGI3Q8N145 548 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 MISP3Q96FF7 219 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 C7orf50Q9BRJ6 194 aaKnown RBP12.19□□□□□ -0.46
TRIM28-213ENST00000598355 TECRQ9NZ01 308 aaKnown RBP12.19□□□□□ -0.46
TRIM28-213ENST00000598355 CACFD1Q9UGQ2 172 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 STAB2Q8WWQ8 2551 aa12.19□□□□□ -0.46
TRIM28-213ENST00000598355 A8MZ25 164 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 CORTO00230 105 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 NDUFB6O95139 128 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 SULT1A3P0DMM9 295 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 SULT1A4P0DMN0 295 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 CCR6P51684 374 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 UBE2MP61081 183 aaKnown RBP12.18□□□□□ -0.46
TRIM28-213ENST00000598355 CD69Q07108 199 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 LYZL2Q7Z4W2 148 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 CENPSQ8N2Z9 138 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 CACNG8Q8WXS5 425 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 MARC2Q969Z3 335 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 PALMDQ9NP74 551 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 HSPB7Q9UBY9 170 aa12.18□□□□□ -0.46
TRIM28-213ENST00000598355 SNCAP37840 140 aa12.17□□□□□ -0.46
TRIM28-213ENST00000598355 MFAP4P55083 255 aa12.17□□□□□ -0.46
TRIM28-213ENST00000598355 PPP1R1AQ13522 171 aa12.17□□□□□ -0.46
TRIM28-213ENST00000598355 SMCO1Q147U7 214 aa12.17□□□□□ -0.46
TRIM28-213ENST00000598355 ANKRD55Q3KP44 614 aa12.17□□□□□ -0.46
TRIM28-213ENST00000598355 DYNLRB2Q8TF09 96 aa12.17□□□□□ -0.46
TRIM28-213ENST00000598355 FNDC4Q9H6D8 234 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-213ENST00000598355 MLXQ9UH92 298 aa12.17□□□□□ -0.46
TRIM28-213ENST00000598355 UFC1Q9Y3C8 167 aa12.17□□□□□ -0.46
TRIM28-213ENST00000598355 IGHV3-35A0A0C4DH35 117 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 ZNF320A2RRD8 509 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 ZNF785A8K8V0 405 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 PITX3O75364 302 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 SFT2D2O95562 160 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 SLC25A6P12236 298 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 SUB1P53999 127 aaKnown RBP eCLIP12.16□□□□□ -0.462e-15■□□□□ 10.7
TRIM28-213ENST00000598355 TNFRSF9Q07011 255 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 TM4SF20Q53R12 229 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 C2orf83Q53S99 150 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 Q56UQ5 140 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 TMEM170AQ8WVE7 144 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 ENY2Q9NPA8 101 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 DAZ1Q9NQZ3 744 aaKnown RBP12.16□□□□□ -0.46
TRIM28-213ENST00000598355 C19orf73Q9NVV2 129 aa12.16□□□□□ -0.46
TRIM28-213ENST00000598355 MRPL27Q9P0M9 148 aaKnown RBP12.16□□□□□ -0.46
TRIM28-213ENST00000598355 A0A1B0GU03 582 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 K7EMT4 169 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 NHLRC4P0CG21 123 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-213ENST00000598355 HTR2BP41595 481 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 INPP1P49441 399 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 C11orf87Q6NUJ2 197 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 TMEM61Q8N0U2 210 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 UBAC2Q8NBM4 344 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 UXS1Q8NBZ7 420 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 PINX1Q96BK5 328 aaKnown RBP12.15□□□□□ -0.46
TRIM28-213ENST00000598355 OR10C1Q96KK4 312 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 TENM3Q9P273 2699 aa12.15□□□□□ -0.46
TRIM28-213ENST00000598355 C15orf62A8K5M9 175 aa12.14□□□□□ -0.47
TRIM28-213ENST00000598355 PLA2G10O15496 165 aa12.14□□□□□ -0.47
TRIM28-213ENST00000598355 NUPL2O15504 423 aaKnown RBP12.14□□□□□ -0.47
TRIM28-213ENST00000598355 IGHV3-48P01763 117 aa12.14□□□□□ -0.47
TRIM28-213ENST00000598355 FRMD6-AS1P0C7T7 363 aa12.14□□□□□ -0.47
TRIM28-213ENST00000598355 IGHV4-30-4P0DP06 118 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms