RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CD300CQ08708 224 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 ZNF415Q09FC8 603 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 SRSF7Q16629 238 aaKnown RBP eCLIP8.13□□□□□ -1.11
LIG3-216ENST00000593099 GUCA2BQ16661 112 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 TMEM249Q2WGJ8 235 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 LAMTOR1Q6IAA8 161 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 C16orf82Q7Z2V1 217 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 BPIFA4PQ86YQ2 179 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 MAP1LC3BQ9GZQ8 125 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 SPANXA1Q9NS26 97 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 HSPB8Q9UJY1 196 aa8.13□□□□□ -1.11
LIG3-216ENST00000593099 CFHR2P36980 270 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 ID1P41134 155 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 AMTP48728 403 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 SLAQ13239 276 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 HLA-DRB5Q30154 266 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 TBL2Q9Y4P3 447 aaKnown RBP8.12□□□□□ -1.11
LIG3-216ENST00000593099 TRAPPC1Q9Y5R8 145 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 MBPP02686 304 aaPredicted RBP8.12□□□□□ -1.11
LIG3-216ENST00000593099 IFITM3Q01628 133 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 TPTE2P1Q5T6R2 138 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 WFDC3Q8IUB2 231 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 GALNT14Q96FL9 552 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 CXorf58Q96LI9 332 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 HIGD1AQ9Y241 93 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 CENPFP49454 3210 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 MYO18BQ8IUG5 2567 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 RBFOX2O43251 390 aaKnown RBP eCLIP8.12□□□□□ -1.117e-8■■■■□ 24.6
LIG3-216ENST00000593099 NAPSAO96009 420 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 ELOBQ15370 118 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 TMEM252Q8N6L7 170 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 COQ2Q96H96 371 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 TMEM167BQ9NRX6 74 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 NDUFS7O75251 213 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 OR2J3O76001 311 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 BTF3P20290 206 aaKnown RBP8.12□□□□□ -1.11
LIG3-216ENST00000593099 DLK1P80370 383 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 CR1LQ2VPA4 569 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 TMEM97Q5BJF2 176 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 TMEM191AQ9H0A3 160 aa8.12□□□□□ -1.11
LIG3-216ENST00000593099 PEF1Q9UBV8 284 aaKnown RBP8.12□□□□□ -1.11
LIG3-216ENST00000593099 IGKV1D-13A0A0B4J2D9 117 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 H3BUX3 64 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 ITGB1BP1O14713 200 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 CFDP00746 253 aaPredicted RBP8.11□□□□□ -1.11
LIG3-216ENST00000593099 IGKV1-13P0DP09 117 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 PSMB2P49721 201 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 RNF144BQ7Z419 303 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 RPUSD4Q96CM3 377 aaKnown RBP8.11□□□□□ -1.11
LIG3-216ENST00000593099 MOB4Q9Y3A3 225 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 CCDC168Q8NDH2 2452 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 MPDU1O75352 247 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 TSPAN13O95857 204 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 PJVKQ0ZLH3 352 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 ABCA1O95477 2261 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 NAV2Q8IVL1 2488 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 J3QLI3 93 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 MAS1LP35410 378 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 VN1R17PQ8TDU5 208 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 FBXL7Q9UJT9 491 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 TRBV6-6A0A0A6YYG2 114 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 MSGN1A6NI15 193 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 S100A4P26447 101 aaKnown RBP8.11□□□□□ -1.11
LIG3-216ENST00000593099 TEX45Q8NA69 505 aa8.11□□□□□ -1.11
LIG3-216ENST00000593099 KIAA2026Q5HYC2 2103 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 SAA1P0DJI8 122 aaPredicted RBP8.1□□□□□ -1.11
LIG3-216ENST00000593099 DUTP33316 252 aaKnown RBP8.1□□□□□ -1.11
LIG3-216ENST00000593099 OR11H7Q8NGC8 314 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 PAX5Q02548 391 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 GAMTQ14353 236 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 TEX36Q5VZQ5 186 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 STPG3Q8N7X2 389 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 OR5AU1Q8NGC0 362 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 OR4B1Q8NGF8 309 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 OR4P4Q8NGL7 312 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 OR52E5Q8NH55 327 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 NEU1Q99519 415 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 IGHV2-70DA0A0C4DH43 119 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 LINC00869P0C866 280 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 SRSF12Q8WXF0 261 aaKnown RBP8.1□□□□□ -1.11
LIG3-216ENST00000593099 ISOC2Q96AB3 205 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 NDUFAF3Q9BU61 184 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 WDR87Q6ZQQ6 2873 aa8.1□□□□□ -1.11
LIG3-216ENST00000593099 UPK2O00526 184 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 SMIM7Q9BQ49 75 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 NAGKQ9UJ70 344 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 COL5A1P20908 1838 aaPredicted RBP8.09□□□□□ -1.11
LIG3-216ENST00000593099 IGKV1D-8A0A087WSZ0 117 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 IGHV1-3A0A0C4DH29 117 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 RRHO14718 337 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 LMO1P25800 156 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 SAA4P35542 130 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 WDR86Q86TI4 376 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 COPS9Q8WXC6 57 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 SMIM8Q96KF7 97 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 TYMSP04818 313 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 TFPI2P48307 235 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 UBE2E1P51965 193 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 PSG5Q15238 335 aa8.09□□□□□ -1.11
LIG3-216ENST00000593099 COX19Q49B96 90 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms