RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 LEAP2Q969E1 77 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 FAM103A1Q9BTL3 118 aaKnown RBP8.87□□□□□ -0.99
VPS4B-206ENST00000591475 TMEM208Q9BTX3 173 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 FBXL7Q9UJT9 491 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 SVILO95425 2214 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 TAS2R45P59539 299 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 GAGE1Q13065 139 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 POU2AF1Q16633 256 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 RTL8BQ17RB0 113 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 PRR30Q53SZ7 412 aaPredicted RBP8.87□□□□□ -0.99
VPS4B-206ENST00000591475 CT45A1Q5HYN5 189 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 TMEM136Q6ZRR5 245 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 DOLPP1Q86YN1 238 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 CT45A3Q8NHU0 189 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 KCNS1Q96KK3 526 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 RNF2Q99496 336 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 C19orf24Q9BVV8 132 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 RNASE7Q9H1E1 156 aaKnown RBP8.87□□□□□ -0.99
VPS4B-206ENST00000591475 NCOR1P1Q9H4R4 102 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 PLEKHA3Q9HB20 300 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 PRNDQ9UKY0 176 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 ZNF835Q9Y2P0 537 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 FAM215AQ9Y5M1 114 aa8.87□□□□□ -0.99
VPS4B-206ENST00000591475 DSCAML1Q8TD84 2053 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 A6NNC1 897 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 DIRC3C9JPN6 131 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 ISLRO14498 428 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 OR7C2O60412 319 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 SPINK4O60575 86 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 AMY1AP04745 511 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 CGB3P0DN86 165 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 CGB7P0DN87 165 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 MRPS11P82912 194 aaKnown RBP8.86□□□□□ -0.99
VPS4B-206ENST00000591475 C17orf58Q2M2W7 97 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 ZNF257Q9Y2Q1 563 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 GOLT1BQ9Y3E0 138 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 TBL2Q9Y4P3 447 aaKnown RBP8.86□□□□□ -0.99
VPS4B-206ENST00000591475 KALRNO60229 2985 aa8.86□□□□□ -0.99
VPS4B-206ENST00000591475 HEATR1Q9H583 2144 aaKnown RBP8.86□□□□□ -0.99
VPS4B-206ENST00000591475 ATRXP46100 2492 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 J3QR06 171 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 HLA-DQA1P01909 254 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 MYOD1P15172 320 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 BTF3P20290 206 aaKnown RBP8.85□□□□□ -0.99
VPS4B-206ENST00000591475 COL8A2P25067 703 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 AMTP48728 403 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 ATP5IP56385 69 aaPredicted RBP8.85□□□□□ -0.99
VPS4B-206ENST00000591475 PRCDQ00LT1 54 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 FXYD3Q14802 87 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 UTF1Q5T230 341 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 SEM1Q6ZVN7 128 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 MOGAT3Q86VF5 341 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 LYG1Q8N1E2 194 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 PNKDQ8N490 385 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 NRN1Q9NPD7 142 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 PLSCR4Q9NRQ2 329 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 RP1L1Q8IWN7 2480 aaPredicted RBP8.85□□□□□ -0.99
VPS4B-206ENST00000591475 KBTBD11-OT1A0A1B0GTJ5 212 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 SMIM27A0A1W2PRY6 76 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 ZNF253O75346 499 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 BATFQ16520 125 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 IBA57Q5T440 356 aaKnown RBP8.85□□□□□ -0.99
VPS4B-206ENST00000591475 BHLHA15Q7RTS1 189 aaPredicted RBP8.85□□□□□ -0.99
VPS4B-206ENST00000591475 Q8N976 141 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 ZNF503Q96F45 646 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 OR2V2Q96R30 315 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 LPAR2Q9HBW0 351 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 GCM1Q9NP62 436 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 RNF114Q9Y508 228 aa8.85□□□□□ -0.99
VPS4B-206ENST00000591475 A0A1W2PRE2 83 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 A0A1W2PS18 150 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 GGTLC3B5MD39 225 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 UPK2O00526 184 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 MMP23AO75900 390 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 MGST1P10620 155 aaKnown RBP8.84□□□□□ -0.99
VPS4B-206ENST00000591475 PMCHP20382 165 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 PPOXP50336 477 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 TCL1AP56279 114 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 SUMO1P63165 101 aaKnown RBP8.84□□□□□ -0.99
VPS4B-206ENST00000591475 KIAA1644Q3SXP7 199 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 IGF2BP2-AS1Q96M15 143 aa8.84□□□□□ -0.99
VPS4B-206ENST00000591475 RAI1Q7Z5J4 1906 aaPredicted RBP8.84□□□□□ -0.99
VPS4B-206ENST00000591475 YLPM1P49750 1951 aaKnown RBP8.84□□□□□ -0.99
VPS4B-206ENST00000591475 LHBP01229 141 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 IGLV2-8P01709 118 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 REG1AP05451 166 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 C8orf88P0DMB2 117 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 SRIP30626 198 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 CEACAM8P31997 349 aaPredicted RBP8.83□□□□□ -1
VPS4B-206ENST00000591475 SLC35B1P78383 322 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 SPATA45Q537H7 98 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 C2orf83Q53S99 150 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 COL5A1-AS1Q5SY13 56 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 RPRMLQ8N4K4 120 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 FAM169BQ8N8A8 192 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 ZNF439Q8NDP4 499 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 STARD4Q96DR4 205 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 MRPL32Q9BYC8 188 aaKnown RBP8.83□□□□□ -1
VPS4B-206ENST00000591475 SERTAD4Q9NUC0 356 aa8.83□□□□□ -1
VPS4B-206ENST00000591475 PPP1R14DQ9NXH3 145 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms