RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 IGHV3-21A0A0B4J1V1 117 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 TRAV25A0A0B4J276 109 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 A0A0G2JRQ6 117 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 ADMP35318 185 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 SNCAP37840 140 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 MFAP4P55083 255 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 KLF9Q13886 244 aaPredicted RBP11.19□□□□□ -0.62
SS18-212ENST00000579061 TM4SF20Q53R12 229 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 PYDC2Q56P42 97 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 Q56UQ5 140 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 ZNF57Q68EA5 555 aaPredicted RBP11.19□□□□□ -0.62
SS18-212ENST00000579061 PVRIGQ6DKI7 326 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 SELENOHQ8IZQ5 122 aaKnown RBP11.19□□□□□ -0.62
SS18-212ENST00000579061 OR52E5Q8NH55 327 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 CACNG8Q8WXS5 425 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 IL22RA2Q969J5 263 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 TRIM63Q969Q1 353 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 MISP3Q96FF7 219 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 CHRDL1Q9BU40 450 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.19□□□□□ -0.62
SS18-212ENST00000579061 MCUBQ9NWR8 336 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 MLXQ9UH92 298 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 KCNIP3Q9Y2W7 256 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 TMEM56-RWDD3S4R434 201 aa11.19□□□□□ -0.62
SS18-212ENST00000579061 IGHV3-35A0A0C4DH35 117 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 K7EMT4 169 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 MT-CO2P00403 227 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 CTSGP08311 255 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 ETV6P41212 452 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 SUB1P53999 127 aaKnown RBP eCLIP11.18□□□□□ -0.62
SS18-212ENST00000579061 CD81P60033 236 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 SPCS3P61009 180 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 ZNF79Q15937 498 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 LHFPL5Q8TAF8 219 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 NEURL2Q9BR09 285 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 TM2D3Q9BRN9 247 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 ZMAT4Q9H898 229 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 ENY2Q9NPA8 101 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 DAZ1Q9NQZ3 744 aaKnown RBP11.18□□□□□ -0.62
SS18-212ENST00000579061 CACFD1Q9UGQ2 172 aa11.18□□□□□ -0.62
SS18-212ENST00000579061 TENM3Q9P273 2699 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 CORTO00230 105 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 NUPL2O15504 423 aaKnown RBP11.17□□□□□ -0.62
SS18-212ENST00000579061 RELQ04864 619 aaPredicted RBP11.17□□□□□ -0.62
SS18-212ENST00000579061 TMEM187Q14656 261 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 GUCA2BQ16661 112 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 SPINK9Q5DT21 86 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 TMEM268Q5VZI3 342 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 Q6ZRM9 215 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 TMEM61Q8N0U2 210 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 TOMM5Q8N4H5 51 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 UBAC2Q8NBM4 344 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 TMEM230Q96A57 120 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 WDR89Q96FK6 387 aaPredicted RBP11.17□□□□□ -0.62
SS18-212ENST00000579061 RCHY1Q96PM5 261 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 TUBA4BQ9H853 241 aa11.17□□□□□ -0.62
SS18-212ENST00000579061 PIGBOS1A0A0B4J2F0 54 aa11.16□□□□□ -0.62
SS18-212ENST00000579061 C15orf62A8K5M9 175 aa11.16□□□□□ -0.62
SS18-212ENST00000579061 RNASE2P10153 161 aaKnown RBP11.16□□□□□ -0.62
SS18-212ENST00000579061 HOXA1P49639 335 aaPredicted RBP11.16□□□□□ -0.62
SS18-212ENST00000579061 ANKRD55Q3KP44 614 aa11.16□□□□□ -0.62
SS18-212ENST00000579061 SPANXN2Q5MJ10 180 aa11.16□□□□□ -0.62
SS18-212ENST00000579061 BTNL8Q6UX41 500 aa11.16□□□□□ -0.62
SS18-212ENST00000579061 GPR146Q96CH1 333 aa11.16□□□□□ -0.62
SS18-212ENST00000579061 A0A0B4J2A0 478 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 GNG7O60262 68 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 CD7P09564 240 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 NPBWR1P48145 328 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 SRPXP78539 464 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 BSXQ3C1V8 233 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 LINC00322Q6ZN03 302 aaPredicted RBP11.15□□□□□ -0.62
SS18-212ENST00000579061 SLC16A13Q7RTY0 426 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 DUSP18Q8NEJ0 188 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 PINX1Q96BK5 328 aaKnown RBP11.15□□□□□ -0.62
SS18-212ENST00000579061 CACNG5Q9UF02 275 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 SHPKQ9UHJ6 478 aa11.15□□□□□ -0.62
SS18-212ENST00000579061 OR11H12B2RN74 326 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 SULT1A3P0DMM9 295 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 SULT1A4P0DMN0 295 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 ANXA3P12429 323 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 AKR1C4P17516 323 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 HTR2BP41595 481 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 SUPT4H1P63272 117 aaKnown RBP11.14□□□□□ -0.63
SS18-212ENST00000579061 HAGHQ16775 308 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 TMEM128Q5BJH2 165 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 LAMTOR1Q6IAA8 161 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 RBPMS2Q6ZRY4 209 aaKnown RBP11.14□□□□□ -0.63
SS18-212ENST00000579061 ZNF414Q96IQ9 312 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 OR10C1Q96KK4 312 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 SPAG8Q99932 426 aaPredicted RBP11.14□□□□□ -0.63
SS18-212ENST00000579061 SLC25A21Q9BQT8 299 aaPredicted RBP11.14□□□□□ -0.63
SS18-212ENST00000579061 C20orf24Q9BUV8 137 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 SRRQ9GZT4 340 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 NDUFA13Q9P0J0 144 aa11.14□□□□□ -0.63
SS18-212ENST00000579061 TSPAN4O14817 238 aa11.13□□□□□ -0.63
SS18-212ENST00000579061 LGI3Q8N145 548 aa11.13□□□□□ -0.63
SS18-212ENST00000579061 OR52B4Q8NGK2 314 aa11.13□□□□□ -0.63
SS18-212ENST00000579061 SPATA25Q9BR10 227 aa11.13□□□□□ -0.63
SS18-212ENST00000579061 DNAH7Q8WXX0 4024 aa11.12□□□□□ -0.63
SS18-212ENST00000579061 DUXBA0A1W2PPF3 345 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms