RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 SLC24A4Q8NFF2 622 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 TMEM170AQ8WVE7 144 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 C4orf3Q8WVX3 66 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 MISP3Q96FF7 219 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 USMG5Q96IX5 58 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 MED28Q9H204 178 aa6.63□□□□□ -1.35
NUP88-211ENST00000575976 IGHV3-21A0A0B4J1V1 117 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 MFSD2BA6NFX1 497 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 I3L521 148 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 K7EIM0 57 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 K7EPK0 472 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 CYB5BO43169 146 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 TSPAN15O95858 294 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 IFNA10P01566 189 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 IGHV3-23P01764 117 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 LGALS1P09382 135 aaKnown RBP6.62□□□□□ -1.35
NUP88-211ENST00000575976 CXCL3P19876 107 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 NPY1RP25929 384 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 PAX9P55771 341 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 H2BFSP57053 126 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 RUNX1Q01196 453 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 RAB32Q13637 225 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 EXOSC2Q13868 293 aaKnown RBP6.62□□□□□ -1.35
NUP88-211ENST00000575976 FCN2Q15485 313 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 MLANAQ16655 118 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 DEFB136Q30KP8 78 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 C15orf32Q32M92 178 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 C2orf83Q53S99 150 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 ZNF343Q6P1L6 599 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 OR11H7Q8NGC8 314 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 PINX1Q96BK5 328 aaKnown RBP6.62□□□□□ -1.35
NUP88-211ENST00000575976 DUX3Q96PT4 197 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 THYN1Q9P016 225 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 RCL1Q9Y2P8 373 aaKnown RBP6.62□□□□□ -1.35
NUP88-211ENST00000575976 LSM5Q9Y4Y9 91 aaKnown RBP6.62□□□□□ -1.35
NUP88-211ENST00000575976 U3KQ87 197 aa6.62□□□□□ -1.35
NUP88-211ENST00000575976 IGHV4OR15-8A0A075B7B6 117 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 A0A087WW49 117 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 ANKRD34BA5PLL1 514 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 C15orf62A8K5M9 175 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 H3BP45 60 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 I3L2K1 104 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 M0QZ24 198 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 CCL24O00175 119 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 SSSCA1O60232 199 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 TMEM50AO95807 157 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 MT-CO2P00403 227 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 TRBV12-3P01733 135 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 IGHV3-48P01763 117 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 MYCNOSP40205 109 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 RRAS2P62070 204 aaPredicted RBP6.61□□□□□ -1.35
NUP88-211ENST00000575976 SPANXN5Q5MJ07 72 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 ETV3LQ6ZN32 361 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 NOXA1Q86UR1 476 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 OR11H1Q8NG94 326 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 OR4F17Q8NGA8 305 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 OR1N2Q8NGR9 330 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 ZNF502Q8TBZ5 544 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 VN1R17PQ8TDU5 208 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 SCARB1Q8WTV0 552 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 EEF1AKMT3Q96AZ1 226 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 RAX2Q96IS3 184 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 SMIM8Q96KF7 97 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 CXorf58Q96LI9 332 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 CCDC140Q96MF4 163 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 CIB3Q96Q77 187 aaPredicted RBP6.61□□□□□ -1.35
NUP88-211ENST00000575976 OR4C12Q96R67 309 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 OR4F4Q96R69 305 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 RAB40CQ96S21 281 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 NMES1Q9C002 83 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 FNDC4Q9H6D8 234 aaPredicted RBP6.61□□□□□ -1.35
NUP88-211ENST00000575976 PSENENQ9NZ42 101 aa6.61□□□□□ -1.35
NUP88-211ENST00000575976 PEF1Q9UBV8 284 aaKnown RBP6.61□□□□□ -1.35
NUP88-211ENST00000575976 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 F8W735 103 aaPredicted RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 CORTO00230 105 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 LY86O95711 162 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 HSPB1P04792 205 aaKnown RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 IFNA4P05014 189 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 OPRK1P41145 380 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 ATP5IP56385 69 aaPredicted RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 S100A10P60903 97 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 RPP30P78346 268 aaKnown RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 CYCSP99999 105 aaKnown RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 DEFA6Q01524 100 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 LRRC37A5PQ49AS3 106 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 CLEC19AQ6UXS0 136 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 Q6ZNX1 250 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 RNASEH2CQ8TDP1 164 aaKnown RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 DPF1Q92782 380 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 C11orf1Q9H5F2 150 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 RANGRFQ9HD47 186 aaPredicted RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 C21orf62Q9NYP8 219 aa6.6□□□□□ -1.35
NUP88-211ENST00000575976 PAIP2BQ9ULR5 123 aaKnown RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 STRAPQ9Y3F4 350 aaKnown RBP6.6□□□□□ -1.35
NUP88-211ENST00000575976 TRBV7-1A0A0A6YYK4 115 aa6.59□□□□□ -1.35
NUP88-211ENST00000575976 FAM24AA6NFZ4 105 aa6.59□□□□□ -1.35
NUP88-211ENST00000575976 PMS2P5A8MQ11 134 aa6.59□□□□□ -1.35
NUP88-211ENST00000575976 PPP5D1E7EU14 171 aa6.59□□□□□ -1.35
NUP88-211ENST00000575976 LINC01619G3V211 115 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms