RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 C1orf100Q5SVJ3 147 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 MAFIPQ8WZ33 124 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 MISP3Q96FF7 219 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 PGLYRP3Q96LB9 341 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 CLUHP3Q96NS8 147 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 METTL26Q96S19 204 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 BABAM2Q9NXR7 383 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 TAS2R8Q9NYW2 309 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 LPAP08519 4548 aa10.92□□□□□ -0.66
VPS53-218ENST00000575207 TEX50A0A1B0GTY4 177 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 A0A1B0GU03 582 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 LALBAP00709 142 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 IGHV3-48P01763 117 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 CD37P11049 281 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 CRYBB3P26998 211 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 ACSM3Q53FZ2 586 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 GDF5OSQ5U4N7 250 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 TMPRSS11AQ6ZMR5 421 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 OR1L8Q8NGR8 309 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 MOB3AQ96BX8 217 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 NARS2Q96I59 477 aaKnown RBP10.91□□□□□ -0.66
VPS53-218ENST00000575207 HINT2Q9BX68 163 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 SLC35B3Q9H1N7 401 aa10.91□□□□□ -0.66
VPS53-218ENST00000575207 TRAV26-1A0A087WT03 109 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 SAC3D1A6NKF1 404 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 NKX2-1P43699 371 aaPredicted RBP10.9□□□□□ -0.66
VPS53-218ENST00000575207 FCN2Q15485 313 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 PLAC9Q5JTB6 97 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 LCE2AQ5TA79 106 aaPredicted RBP10.9□□□□□ -0.66
VPS53-218ENST00000575207 OR1P1Q8NH06 330 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 TMEM208Q9BTX3 173 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 CENPOQ9BU64 300 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 DCSTAMPQ9H295 470 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 NDUFA4L2Q9NRX3 87 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 TMEM140Q9NV12 185 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 OR2W1Q9Y3N9 320 aa10.9□□□□□ -0.66
VPS53-218ENST00000575207 TCRBV3S1A0A5B6 114 aa10.89□□□□□ -0.67
VPS53-218ENST00000575207 NPIPB6E9PJ23 425 aa10.89□□□□□ -0.67
VPS53-218ENST00000575207 HLA-DQB1P01920 261 aa10.89□□□□□ -0.67
VPS53-218ENST00000575207 HNRNPA3P51991 378 aaKnown RBP10.89□□□□□ -0.67
VPS53-218ENST00000575207 AP2S1P53680 142 aaPredicted RBP10.89□□□□□ -0.67
VPS53-218ENST00000575207 TAS2R31P59538 309 aa10.89□□□□□ -0.67
VPS53-218ENST00000575207 POU2AF1Q16633 256 aa10.89□□□□□ -0.67
VPS53-218ENST00000575207 SCXQ7RTU7 201 aa10.89□□□□□ -0.67
VPS53-218ENST00000575207 ZFP41Q8N8Y5 198 aa10.89□□□□□ -0.67
VPS53-218ENST00000575207 LRCOL1A6NCL2 159 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 H3BNG1 76 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 M0QYG6 137 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 MT-CO2P00403 227 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 NQO2P16083 231 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 M6PRP20645 277 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 ETV1P50549 477 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 OR5I1Q13606 314 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 FLOT2Q14254 428 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 SPAG16Q8N0X2 631 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 GLMPQ8WWB7 406 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 ZNF446Q9NWS9 450 aa10.88□□□□□ -0.67
VPS53-218ENST00000575207 IGKV1D-13A0A0B4J2D9 117 aa10.87□□□□□ -0.67
VPS53-218ENST00000575207 A0A0J9YY99 117 aa10.87□□□□□ -0.67
VPS53-218ENST00000575207 PLAC8L1A1L4L8 177 aa10.87□□□□□ -0.67
VPS53-218ENST00000575207 IGKV1-13P0DP09 117 aa10.87□□□□□ -0.67
VPS53-218ENST00000575207 TSPOP30536 169 aa10.87□□□□□ -0.67
VPS53-218ENST00000575207 DEFB1P60022 68 aa10.87□□□□□ -0.67
VPS53-218ENST00000575207 DMBX1Q8NFW5 382 aa10.87□□□□□ -0.67
VPS53-218ENST00000575207 OR4B1Q8NGF8 309 aa10.87□□□□□ -0.67
VPS53-218ENST00000575207 MRPS18AQ9NVS2 196 aaKnown RBP10.87□□□□□ -0.67
VPS53-218ENST00000575207 ZNF705GA8MUZ8 300 aaPredicted RBP10.86□□□□□ -0.67
VPS53-218ENST00000575207 EBAG9O00559 213 aa10.86□□□□□ -0.67
VPS53-218ENST00000575207 RBFOX2O43251 390 aaKnown RBP eCLIP10.86□□□□□ -0.67
VPS53-218ENST00000575207 ATP8B1O43520 1251 aa10.86□□□□□ -0.67
VPS53-218ENST00000575207 PRM2P04554 102 aa10.86□□□□□ -0.67
VPS53-218ENST00000575207 GABRB1P18505 474 aa10.86□□□□□ -0.67
VPS53-218ENST00000575207 NFYAP23511 347 aaPredicted RBP10.86□□□□□ -0.67
VPS53-218ENST00000575207 NPBWR1P48145 328 aa10.86□□□□□ -0.67
VPS53-218ENST00000575207 PPP5CP53041 499 aa10.86□□□□□ -0.67
VPS53-218ENST00000575207 Q8N814 137 aa10.86□□□□□ -0.67
VPS53-218ENST00000575207 PINX1Q96BK5 328 aaKnown RBP10.86□□□□□ -0.67
VPS53-218ENST00000575207 SAV1Q9H4B6 383 aaPredicted RBP10.86□□□□□ -0.67
VPS53-218ENST00000575207 KCNK7Q9Y2U2 307 aa10.86□□□□□ -0.67
VPS53-218ENST00000575207 MAPK3P27361 379 aaPredicted RBP10.85□□□□□ -0.67
VPS53-218ENST00000575207 PSG9Q00887 426 aa10.85□□□□□ -0.67
VPS53-218ENST00000575207 CADM3Q8N126 398 aa10.85□□□□□ -0.67
VPS53-218ENST00000575207 OR56B1Q8NGI3 324 aa10.85□□□□□ -0.67
VPS53-218ENST00000575207 DAZAP1Q96EP5 407 aaKnown RBP10.85□□□□□ -0.67
VPS53-218ENST00000575207 NRN1Q9NPD7 142 aa10.85□□□□□ -0.67
VPS53-218ENST00000575207 CRCT1Q9UGL9 99 aa10.85□□□□□ -0.67
VPS53-218ENST00000575207 IGKV1D-8A0A087WSZ0 117 aa10.84□□□□□ -0.67
VPS53-218ENST00000575207 HPRT1P00492 218 aa10.84□□□□□ -0.67
VPS53-218ENST00000575207 ST3GAL4Q11206 333 aa10.84□□□□□ -0.67
VPS53-218ENST00000575207 FOXI2Q6ZQN5 318 aa10.84□□□□□ -0.67
VPS53-218ENST00000575207 Q6ZS49 121 aa10.84□□□□□ -0.67
VPS53-218ENST00000575207 TMEM56Q96MV1 263 aa10.84□□□□□ -0.67
VPS53-218ENST00000575207 FGF20Q9NP95 211 aaPredicted RBP10.84□□□□□ -0.67
VPS53-218ENST00000575207 MSRB1Q9NZV6 116 aa10.84□□□□□ -0.67
VPS53-218ENST00000575207 A0A0U1RQV1 116 aa10.83□□□□□ -0.68
VPS53-218ENST00000575207 PNMA8CA0A1B0GUJ8 204 aa10.83□□□□□ -0.68
VPS53-218ENST00000575207 ZNF701M0R085 212 aaPredicted RBP10.83□□□□□ -0.68
VPS53-218ENST00000575207 TNFSF12O43508 249 aa10.83□□□□□ -0.68
VPS53-218ENST00000575207 ZNF79Q15937 498 aa10.83□□□□□ -0.68
VPS53-218ENST00000575207 C16orf54Q6UWD8 224 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms