RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 THTPAQ9BU02 230 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 SLC25A31Q9H0C2 315 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 SND1-IT1Q9HBX3 110 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 SLCO1B3Q9NPD5 702 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 LYRM2Q9NU23 88 aaPredicted RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 DEC1Q9P2X7 70 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 CTSZQ9UBR2 303 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 ANAPC10Q9UM13 185 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 HES2Q9Y543 173 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 HECTD4Q9Y4D8 3996 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 TCHHQ07283 1943 aa2.14□□□□□ -2.07
VPS35-209ENST00000568642 SRRM2Q9UQ35 2752 aaKnown RBP2.14□□□□□ -2.07
VPS35-209ENST00000568642 TRAV36DV7A0A075B6V5 113 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 TRAV4A0A0B4J268 109 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 A0A1B0GUV1 79 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 A0A1B0GW64 132 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 A0A1W2PPR1 153 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 GMNCA6NCL1 334 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 CCDC160A6NGH7 325 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 C5orf58C9J3I9 102 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 KRBOX1C9JBD0 128 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 SOCS3O14543 225 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 SULT1C4O75897 302 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 PDYNP01213 254 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 PRB2P02812 416 aaPredicted RBP2.13□□□□□ -2.07
VPS35-209ENST00000568642 OR4A8P0C604 315 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 NELFEP18615 380 aaKnown RBP2.13□□□□□ -2.07
VPS35-209ENST00000568642 RAB3AP20336 220 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 DDTP30046 118 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 SDC4P31431 198 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 HSPA9P38646 679 aaKnown RBP2.13□□□□□ -2.07
VPS35-209ENST00000568642 TAF6P49848 677 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 DAPP51397 102 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 P2RX1P51575 399 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 DAD1P61803 113 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 RPL23P62829 140 aaKnown RBP2.13□□□□□ -2.07
VPS35-209ENST00000568642 ELF3P78545 371 aaPredicted RBP2.13□□□□□ -2.07
VPS35-209ENST00000568642 BAMBIQ13145 260 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 ARFRP1Q13795 201 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 PAFAH1B3Q15102 231 aaKnown RBP2.13□□□□□ -2.07
VPS35-209ENST00000568642 EBPQ15125 230 aaKnown RBP2.13□□□□□ -2.07
VPS35-209ENST00000568642 KCNJ8Q15842 424 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 SCGB1D4Q6XE38 83 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 ACP7Q6ZNF0 438 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 TMPPEQ6ZT21 453 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 LHFPL1Q86WI0 220 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 UBL4BQ8N7F7 174 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 Q8NBF4 154 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 ZNF439Q8NDP4 499 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 ZNF555Q8NEP9 628 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 NPBQ8NG41 125 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 OR52P1PQ8NH57 321 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 MCFD2Q8NI22 146 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 JOSD2Q8TAC2 188 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 DCUN1D1Q96GG9 259 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 ZC2HC1AQ96GY0 325 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 CAPZA3Q96KX2 299 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 GPR82Q96P67 336 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 LYSMD1Q96S90 227 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 SERPINI1Q99574 410 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 CHAC1Q9BUX1 264 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 CCDC32Q9BV29 185 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 C1QTNF4Q9BXJ3 329 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 OR51I2Q9H344 312 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 Q9H3A6 140 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 RSL24D1Q9UHA3 163 aaKnown RBP2.13□□□□□ -2.07
VPS35-209ENST00000568642 WASHC3Q9Y3C0 194 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 INSIG2Q9Y5U4 225 aa2.13□□□□□ -2.07
VPS35-209ENST00000568642 FSIP2Q5CZC0 6907 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 PCM1Q15154 2024 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 TRAV19A0A0A6YYK7 116 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 IGKV1-6A0A0C4DH72 117 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 A0A0J9YY10 115 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 A0A1B0GX78 115 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 NKX2-6A6NCS4 301 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 PEX7O00628 323 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 DEGS1O15121 323 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 CDRT1O95170 752 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 IGKV1-39P01597 117 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 HBZP02008 142 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 IGKV1D-39P04432 117 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 ZNF688P0C7X2 276 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 CFC1BP0CG36 223 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 CTSEP14091 401 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 RCVRNP35243 200 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 APLNRP35414 380 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 ATP5G3P48201 142 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 CRISP3P54108 245 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 TAS2R19P59542 299 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 MAXP61244 160 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 NCALDP61601 193 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 RRAS2P62070 204 aaPredicted RBP2.12□□□□□ -2.07
VPS35-209ENST00000568642 CRADDP78560 199 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 EMX2Q04743 252 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 LOXL1Q08397 574 aaPredicted RBP2.12□□□□□ -2.07
VPS35-209ENST00000568642 DEFB133Q30KQ1 61 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 MORN2Q502X0 79 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 ATP6AP1LQ52LC2 224 aa2.12□□□□□ -2.07
VPS35-209ENST00000568642 IBA57Q5T440 356 aaKnown RBP2.12□□□□□ -2.07
VPS35-209ENST00000568642 C6orf52Q5T4I8 152 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms