RNA–Protein interactions for RNA: ENST00000566200.1

ABCA3-204, Transcript of ATP binding cassette subfamily A member 3, human

TSL 3

Gene ABCA3, Length 1,232 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCA3-204	ENST00000566200	TOMM20L	Q6UXN7	152 aa		13.78	□□□□□ -0.2
ABCA3-204	ENST00000566200	OR4A16	Q8NH70	328 aa		13.78	□□□□□ -0.2
ABCA3-204	ENST00000566200	GATAD1	Q8WUU5	269 aa		13.78	□□□□□ -0.2
ABCA3-204	ENST00000566200	PINX1	Q96BK5	328 aa	Known RBP	13.78	□□□□□ -0.2
ABCA3-204	ENST00000566200	RARRES2	Q99969	163 aa		13.78	□□□□□ -0.2
ABCA3-204	ENST00000566200	KRTAP17-1	Q9BYP8	105 aa		13.78	□□□□□ -0.2
ABCA3-204	ENST00000566200	C6orf62	Q9GZU0	229 aa	Predicted RBP	13.78	□□□□□ -0.2
ABCA3-204	ENST00000566200	HERC2	O95714	4834 aa		13.78	□□□□□ -0.2
ABCA3-204	ENST00000566200	UCP3	P55916	312 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	CMC4	P56277	68 aa	Predicted RBP	13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	NANOS2	P60321	138 aa	Known RBP	13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	TSPAN5	P62079	268 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	SPINK9	Q5DT21	86 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	LGALS9C	Q6DKI2	356 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	LPCAT3	Q6P1A2	487 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	TCF24	Q7RTU0	167 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	FAM24B	Q8N5W8	94 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	ST8SIA2	Q92186	375 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	C11orf68	Q9H3H3	251 aa	Known RBP	13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	VSIR	Q9H7M9	311 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	ZFAND3	Q9H8U3	227 aa		13.77	□□□□□ -0.21
ABCA3-204	ENST00000566200	DNAH6	Q9C0G6	4158 aa		13.76	□□□□□ -0.21
ABCA3-204	ENST00000566200	GNG7	O60262	68 aa		13.76	□□□□□ -0.21
ABCA3-204	ENST00000566200	SNX29P2	Q8IUI4	249 aa		13.76	□□□□□ -0.21
ABCA3-204	ENST00000566200	OR11H2	Q8NH07	326 aa		13.76	□□□□□ -0.21
ABCA3-204	ENST00000566200	COMMD3	Q9UBI1	195 aa		13.76	□□□□□ -0.21
ABCA3-204	ENST00000566200	IGHV3-66	A0A0C4DH42	116 aa		13.75	□□□□□ -0.21
ABCA3-204	ENST00000566200	IGKV1-5	P01602	117 aa		13.75	□□□□□ -0.21
ABCA3-204	ENST00000566200	APOA1	P02647	267 aa		13.75	□□□□□ -0.21
ABCA3-204	ENST00000566200		P0C879	139 aa		13.75	□□□□□ -0.21
ABCA3-204	ENST00000566200	PVRIG	Q6DKI7	326 aa		13.75	□□□□□ -0.21
ABCA3-204	ENST00000566200	CMTM3	Q96MX0	182 aa		13.75	□□□□□ -0.21
ABCA3-204	ENST00000566200	MS4A6A	Q9H2W1	248 aa		13.75	□□□□□ -0.21
ABCA3-204	ENST00000566200	SCPEP1	Q9HB40	452 aa		13.75	□□□□□ -0.21
ABCA3-204	ENST00000566200		A0A1B0GU03	582 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200		M0QYG6	137 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	DEFB4A	O15263	64 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	ST8SIA3	O43173	380 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	DFFB	O76075	338 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	S100G	P29377	79 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	RCVRN	P35243	200 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	NCS1	P62166	190 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	ERH	P84090	104 aa	Known RBP	13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	LEMD1	Q68G75	181 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	C11orf45	Q8TAV5	145 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	GINS3	Q9BRX5	216 aa		13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	MRPL36	Q9P0J6	103 aa	Known RBP	13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200	PUS1	Q9Y606	427 aa	Known RBP eCLIP	13.74	□□□□□ -0.21
ABCA3-204	ENST00000566200		A0A0B4J293	547 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	CA1	P00915	261 aa	Predicted RBP	13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	ELK1	P19419	428 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	PI3	P19957	117 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	DEFB131A	P59861	70 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	PRR20E	P86478	221 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	PRR20C	P86479	221 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	PRR20D	P86480	221 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	PRR20B	P86481	221 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	PRR20A	P86496	221 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	TP53RK	Q96S44	253 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	FBXL17	Q9UF56	701 aa		13.73	□□□□□ -0.21
ABCA3-204	ENST00000566200	HECTD4	Q9Y4D8	3996 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	INS-IGF2	F8WCM5	200 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	HPGDS	O60760	199 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	TMEM50A	O95807	157 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	RND3	P61587	244 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	PAFAH1B2	P68402	229 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	RBMS2	Q15434	407 aa	Known RBP	13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	ZNF600	Q6ZNG1	722 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	LHFPL1	Q86WI0	220 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	DUSP18	Q8NEJ0	188 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	MFF	Q9GZY8	342 aa		13.72	□□□□□ -0.21
ABCA3-204	ENST00000566200	TRAV2	A0A0B4J234	112 aa		13.71	□□□□□ -0.21
ABCA3-204	ENST00000566200	CD5	P06127	495 aa		13.71	□□□□□ -0.21
ABCA3-204	ENST00000566200	GIG44	P09565	113 aa	Predicted RBP	13.71	□□□□□ -0.21
ABCA3-204	ENST00000566200	RNASE2	P10153	161 aa	Known RBP	13.71	□□□□□ -0.21
ABCA3-204	ENST00000566200	NPBWR1	P48145	328 aa		13.71	□□□□□ -0.21
ABCA3-204	ENST00000566200	FNDC4	Q9H6D8	234 aa	Predicted RBP	13.71	□□□□□ -0.21
ABCA3-204	ENST00000566200		A0A087WXM4	84 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200		A0A0G2JRQ6	117 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200	SMIM31	A0A1B0GVY4	71 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200	VBP1	P61758	197 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200	TMEM187	Q14656	261 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200	MLANA	Q16655	118 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200	SLC35G3	Q8N808	338 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200		Q8NAQ8	132 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200	FUNDC2	Q9BWH2	189 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200	KLK11	Q9UBX7	282 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200	AGRN	O00468	2067 aa		13.7	□□□□□ -0.22
ABCA3-204	ENST00000566200	DNASE2	O00115	360 aa	Predicted RBP	13.69	□□□□□ -0.22
ABCA3-204	ENST00000566200	SNCA	P37840	140 aa		13.69	□□□□□ -0.22
ABCA3-204	ENST00000566200	ETV6	P41212	452 aa		13.69	□□□□□ -0.22
ABCA3-204	ENST00000566200	PIGP	P57054	158 aa		13.69	□□□□□ -0.22
ABCA3-204	ENST00000566200	RPL11	P62913	178 aa	Known RBP	13.69	□□□□□ -0.22
ABCA3-204	ENST00000566200	RNASE12	Q5GAN4	147 aa	Known RBP	13.69	□□□□□ -0.22
ABCA3-204	ENST00000566200	ZNF486	Q96H40	463 aa	Predicted RBP	13.69	□□□□□ -0.22
ABCA3-204	ENST00000566200		K7EQG2	157 aa		13.68	□□□□□ -0.22
ABCA3-204	ENST00000566200	CD3D	P04234	171 aa		13.68	□□□□□ -0.22
ABCA3-204	ENST00000566200	PGAM2	P15259	253 aa		13.68	□□□□□ -0.22
ABCA3-204	ENST00000566200	PPP5C	P53041	499 aa		13.68	□□□□□ -0.22
ABCA3-204	ENST00000566200	BSX	Q3C1V8	233 aa		13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 83 ms