RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 LAIR2Q6ISS4 152 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 SPATA12Q7Z6I5 190 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 C6orf223Q8N319 242 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 ZBTB34Q8NCN2 500 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 OR13F1Q8NGS4 319 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 OR1P1Q8NH06 330 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 NUDCD2Q8WVJ2 157 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 PINX1Q96BK5 328 aaKnown RBP5.22□□□□□ -1.57
VPS4A-203ENST00000564399 MOB3AQ96BX8 217 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 GRAMD2BQ96HH9 432 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 TMEM56Q96MV1 263 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 TXN2Q99757 166 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 ATG101Q9BSB4 218 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 SLC5A7Q9GZV3 580 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 PLEKHA2Q9HB19 425 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 ANXA10Q9UJ72 324 aa5.22□□□□□ -1.57
VPS4A-203ENST00000564399 LSM2Q9Y333 95 aaKnown RBP5.22□□□□□ -1.57
VPS4A-203ENST00000564399 PUS1Q9Y606 427 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS4A-203ENST00000564399 IGHV3OR16-12A0A075B7B8 117 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 A0A1W2PS18 150 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 TMEM189A5PLL7 270 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 TMEM235A6NFC5 223 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 MARCH11A6NNE9 402 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 I3L2K1 104 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 PDCD5O14737 125 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 MT-CO2P00403 227 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 GNAO1P09471 354 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 NPPCP23582 126 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 PSMA1P25786 263 aaKnown RBP5.21□□□□□ -1.58
VPS4A-203ENST00000564399 FXYD4P59646 89 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 ARPC4P59998 168 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 MSMO1Q15800 293 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 HACD4Q5VWC8 232 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 ZNF600Q6ZNG1 722 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 TPRA1Q86W33 373 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 RAB40CQ96S21 281 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 NIPSNAP3BQ9BS92 247 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 YTHDF1Q9BYJ9 559 aaKnown RBP5.21□□□□□ -1.58
VPS4A-203ENST00000564399 CCDC90BQ9GZT6 254 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 FKBP14Q9NWM8 211 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 COMMD9Q9P000 198 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 APOBP04114 4563 aaKnown RBP5.21□□□□□ -1.58
VPS4A-203ENST00000564399 LRP1BQ9NZR2 4599 aa5.21□□□□□ -1.58
VPS4A-203ENST00000564399 NBDYA0A0U1RRE5 68 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 TEX48A0A1B0GUV7 120 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 IFITM5A6NNB3 132 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 CASQ2O14958 399 aaPredicted RBP5.2□□□□□ -1.58
VPS4A-203ENST00000564399 KRASP01116 189 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 PPYP01298 95 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 PTHLHP12272 177 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 FGF9P31371 208 aaPredicted RBP5.2□□□□□ -1.58
VPS4A-203ENST00000564399 P2RY1P47900 373 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 NPBWR1P48145 328 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 OR10A3P58181 314 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 FAM3BP58499 235 aaPredicted RBP5.2□□□□□ -1.58
VPS4A-203ENST00000564399 FABP5Q01469 135 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 DHRS2Q13268 280 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 PSMG4Q5JS54 123 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 FAM222AQ5U5X8 452 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 TMEM88Q6PEY1 159 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 TMEM17Q86X19 198 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 TSPAN14Q8NG11 270 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 NARS2Q96I59 477 aaKnown RBP5.2□□□□□ -1.58
VPS4A-203ENST00000564399 METTL26Q96S19 204 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 FKBP11Q9NYL4 201 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 PRNDQ9UKY0 176 aa5.2□□□□□ -1.58
VPS4A-203ENST00000564399 A0A1B0GU03 582 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 HELTA6NFD8 242 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 SMIM9A6NGZ8 99 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 MYL9P24844 172 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 G6PCP35575 357 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 LPAR6P43657 344 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 EIF2B2P49770 351 aaKnown RBP5.19□□□□□ -1.58
VPS4A-203ENST00000564399 ZNF818PQ6ZRF7 136 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 BEST4Q8NFU0 473 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 DCANP1Q8TF63 244 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 NEU1Q99519 415 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 ZFAND3Q9H8U3 227 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 ACOT13Q9NPJ3 140 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 SCN3BQ9NY72 215 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 DKK2Q9UBU2 259 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 RFNGQ9Y644 331 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 DNAH5Q8TE73 4624 aa5.19□□□□□ -1.58
VPS4A-203ENST00000564399 DBX1A6NMT0 343 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 SSX5O60225 188 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 TMEM50AO95807 157 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 RLN1P04808 185 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 FCER2P06734 321 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 RAB3BP20337 219 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 F2RP25116 425 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 PPP5CP53041 499 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 FXYD7P58549 80 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 HERV-K104P61576 105 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 DAD1P61803 113 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 SNRPD3P62318 126 aaKnown RBP5.18□□□□□ -1.58
VPS4A-203ENST00000564399 ERHP84090 104 aaKnown RBP5.18□□□□□ -1.58
VPS4A-203ENST00000564399 GSG1LQ6UXU4 331 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 ZNF705AQ6ZN79 300 aaPredicted RBP5.18□□□□□ -1.58
VPS4A-203ENST00000564399 PACRGLQ8N7B6 248 aa5.18□□□□□ -1.58
VPS4A-203ENST00000564399 C15orf53Q8NAA6 179 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms