RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 LRRC37A5PQ49AS3 106 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 KLF17Q5JT82 389 aaPredicted RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 HES3Q5TGS1 186 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 C19orf48Q6RUI8 117 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 ACP7Q6ZNF0 438 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 ZNF571Q7Z3V5 609 aaPredicted RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 COMMD6Q7Z4G1 85 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 C3orf22Q8N5N4 141 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 NPWQ8N729 165 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 ZNF441Q8N8Z8 693 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 OR10P1Q8NGE3 313 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 OR51H1Q8NH63 302 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 SGMS2Q8NHU3 365 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 GNPNAT1Q96EK6 184 aaPredicted RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 BORCS8Q96FH0 119 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 LINC00526Q96FQ7 95 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 SLC25A21Q9BQT8 299 aaPredicted RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 GNB1LQ9BYB4 327 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 NAA60Q9H7X0 242 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 NRN1Q9NPD7 142 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 ZNF257Q9Y2Q1 563 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 PYGO1Q9Y3Y4 419 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 CHCHD2Q9Y6H1 151 aaPredicted RBP4.03□□□□□ -1.76
VPS35-205ENST00000563984 ANKRD36CQ5JPF3 1778 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 UBR2Q8IWV8 1755 aa4.03□□□□□ -1.76
VPS35-205ENST00000563984 TUBGCP6Q96RT7 1819 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 EP400Q96L91 3159 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 TRPM2O94759 1503 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 XRN1Q8IZH2 1706 aaKnown RBP4.02□□□□□ -1.77
VPS35-205ENST00000563984 BAZ2AQ9UIF9 1905 aaKnown RBP4.02□□□□□ -1.77
VPS35-205ENST00000563984 TRAV8-2A0A0B4J237 113 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 TRAV8-4A0A0B4J246 113 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 A0A0D9SFI3 127 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 FAM236AA0A1B0GUQ0 79 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 FAM236BA0A1B0GV22 79 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 ZNF860A6NHJ4 632 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 FAM90A26D6RGX4 464 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 LY6LH3BQJ8 138 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 PGLYRP1O75594 196 aaPredicted RBP4.02□□□□□ -1.77
VPS35-205ENST00000563984 LYZL6O75951 148 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 NDUFB6O95139 128 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 DUSP14O95147 198 aaKnown RBP4.02□□□□□ -1.77
VPS35-205ENST00000563984 LYPD3O95274 346 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 IGHG1P01857 330 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 LGALS2P05162 132 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 CRYGSP22914 178 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 FOXA3P55318 350 aaPredicted RBP4.02□□□□□ -1.77
VPS35-205ENST00000563984 PPP1CAP62136 330 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 ZNF506Q5JVG8 444 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 VAX1Q5SQQ9 334 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 PLPP4Q5VZY2 271 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 OR4C11Q6IEV9 310 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 DGAT2L6Q6ZPD8 337 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 Q6ZRU5 148 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 LHFPL1Q86WI0 220 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 OTOSQ8NHW6 89 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 NEURL3Q96EH8 262 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 DPH3Q96FX2 82 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 CARD19Q96LW7 228 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 SLC35B3Q9H1N7 401 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 PDFQ9HBH1 243 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 MTFP1Q9UDX5 166 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 MARCOQ9UEW3 520 aaPredicted RBP4.02□□□□□ -1.77
VPS35-205ENST00000563984 RPUSD1Q9UJJ7 312 aaKnown RBP4.02□□□□□ -1.77
VPS35-205ENST00000563984 ANK1P16157 1881 aa4.02□□□□□ -1.77
VPS35-205ENST00000563984 NUP210Q8TEM1 1887 aaPredicted RBP4.02□□□□□ -1.77
VPS35-205ENST00000563984 SLIT1O75093 1534 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 PXDNLA1KZ92 1463 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 SMCHD1A6NHR9 2005 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 CEP350Q5VT06 3117 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 TRBV19A0A075B6N1 114 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 TRAV4A0A0B4J268 109 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 CCL15-CCL14A0A0B4J2E2 113 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 C3orf85A0A1B0GTC6 90 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 A0A1W2PPM0 123 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 MED19A0JLT2 244 aaPredicted RBP4.01□□□□□ -1.77
VPS35-205ENST00000563984 GABARAPH6UMI1 98 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 FCN1O00602 326 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 EIF4EP06730 217 aaKnown RBP4.01□□□□□ -1.77
VPS35-205ENST00000563984 OR9G9P0C7N8 305 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 CECR9P0C854 216 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 LINC00869P0C866 280 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 CTLA4P16410 223 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 FKBP2P26885 142 aaKnown RBP4.01□□□□□ -1.77
VPS35-205ENST00000563984 OPRM1P35372 400 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 NMUP48645 174 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 PSMB3P49720 205 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 HLA-DRB3P79483 266 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 MSMO1Q15800 293 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 ZNF726P1Q15940 193 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 KRTAP24-1Q3LI83 254 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 PHLDA2Q53GA4 152 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 Q56UQ5 140 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 FHL5Q5TD97 284 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 FRG2Q64ET8 278 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 LCN8Q6JVE9 175 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 KCTD18Q6PI47 426 aaPredicted RBP4.01□□□□□ -1.77
VPS35-205ENST00000563984 SLC25A34Q6PIV7 304 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 DPPA3Q6W0C5 159 aa4.01□□□□□ -1.77
VPS35-205ENST00000563984 FOXL2NBQ6ZUU3 175 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms