RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 IGHV4-31P0DP07 118 aa14.35□□□□□ -0.11
COMMD4-208ENST00000563220 SERF2P84101 59 aa14.35□□□□□ -0.11
COMMD4-208ENST00000563220 ZNF616Q08AN1 781 aa14.35□□□□□ -0.11
COMMD4-208ENST00000563220 C19orf35Q6ZS72 473 aa14.35□□□□□ -0.11
COMMD4-208ENST00000563220 NPVFQ9HCQ7 196 aa14.35□□□□□ -0.11
COMMD4-208ENST00000563220 CSMD1Q96PZ7 3565 aa14.35□□□□□ -0.11
COMMD4-208ENST00000563220 CNIH1O95406 144 aa14.34□□□□□ -0.11
COMMD4-208ENST00000563220 RPRMQ9NS64 109 aa14.34□□□□□ -0.11
COMMD4-208ENST00000563220 TSPAN15O95858 294 aa14.33□□□□□ -0.11
COMMD4-208ENST00000563220 NPBWR1P48145 328 aa14.33□□□□□ -0.11
COMMD4-208ENST00000563220 SUB1P53999 127 aaKnown RBP eCLIP14.33□□□□□ -0.11
COMMD4-208ENST00000563220 MFAP2P55001 183 aa14.33□□□□□ -0.11
COMMD4-208ENST00000563220 FXYD3Q14802 87 aa14.33□□□□□ -0.11
COMMD4-208ENST00000563220 TMEM249Q2WGJ8 235 aa14.33□□□□□ -0.11
COMMD4-208ENST00000563220 ACSM6Q6P461 480 aa14.33□□□□□ -0.11
COMMD4-208ENST00000563220 MEGF9Q9H1U4 602 aa14.33□□□□□ -0.11
COMMD4-208ENST00000563220 LSM4Q9Y4Z0 139 aaKnown RBP14.33□□□□□ -0.11
COMMD4-208ENST00000563220 ELLP55199 621 aaPredicted RBP14.33□□□□□ -0.12
COMMD4-208ENST00000563220 CD69Q07108 199 aa14.33□□□□□ -0.12
COMMD4-208ENST00000563220 Q8N9W7 124 aa14.33□□□□□ -0.12
COMMD4-208ENST00000563220 PIFOQ8TCI5 191 aa14.33□□□□□ -0.12
COMMD4-208ENST00000563220 SSMEM1Q8WWF3 244 aa14.33□□□□□ -0.12
COMMD4-208ENST00000563220 MGST2Q99735 147 aa14.33□□□□□ -0.12
COMMD4-208ENST00000563220 SCRT1Q9BWW7 348 aa14.33□□□□□ -0.12
COMMD4-208ENST00000563220 CELSR1Q9NYQ6 3014 aa14.32□□□□□ -0.12
COMMD4-208ENST00000563220 FNDC10F2Z333 226 aa14.32□□□□□ -0.12
COMMD4-208ENST00000563220 CX3CL1P78423 397 aa14.32□□□□□ -0.12
COMMD4-208ENST00000563220 GAMTQ14353 236 aa14.32□□□□□ -0.12
COMMD4-208ENST00000563220 PVRIGQ6DKI7 326 aa14.32□□□□□ -0.12
COMMD4-208ENST00000563220 ZNF562Q6V9R5 426 aa14.32□□□□□ -0.12
COMMD4-208ENST00000563220 MRPL41Q8IXM3 137 aaKnown RBP14.32□□□□□ -0.12
COMMD4-208ENST00000563220 ZNF114Q8NC26 417 aa14.32□□□□□ -0.12
COMMD4-208ENST00000563220 FAM103A1Q9BTL3 118 aaKnown RBP14.32□□□□□ -0.12
COMMD4-208ENST00000563220 FNDC4Q9H6D8 234 aaPredicted RBP14.32□□□□□ -0.12
COMMD4-208ENST00000563220 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.32□□□□□ -0.122e-10■■■■■ 30.4
COMMD4-208ENST00000563220 AGPAT2O15120 278 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 PEA15Q15121 130 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 TMEM88Q6PEY1 159 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 ZNF709Q8N972 641 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 RNASEH2CQ8TDP1 164 aaKnown RBP14.31□□□□□ -0.12
COMMD4-208ENST00000563220 C1RLQ9NZP8 487 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 GCN1Q92616 2671 aaKnown RBP14.31□□□□□ -0.12
COMMD4-208ENST00000563220 NAV3Q8IVL0 2385 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 C9JQL5 133 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 MPDU1O75352 247 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 TSPAN9O75954 239 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 GPX4P36969 197 aaPredicted RBP14.31□□□□□ -0.12
COMMD4-208ENST00000563220 NDPQ00604 133 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 TMEM41BQ5BJD5 291 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 SPSB3Q6PJ21 355 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 DPPA3Q6W0C5 159 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 CBLN2Q8IUK8 224 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 LFNGQ8NES3 379 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 OR2T6Q8NHC8 308 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 CACNG8Q8WXS5 425 aa14.31□□□□□ -0.12
COMMD4-208ENST00000563220 PRRC2AP48634 2157 aaKnown RBP14.3□□□□□ -0.12
COMMD4-208ENST00000563220 A0A1B0GV50 99 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 C17orf112F2Z3M2 114 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 J3QLI3 93 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 RAB2AP61019 212 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 ZNF726P1Q15940 193 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 FFAR4Q5NUL3 377 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 TEPPQ6URK8 271 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 TMEM144Q7Z5S9 345 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 WFDC11Q8NEX6 87 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 OR1P1Q8NH06 330 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 ABHD5Q8WTS1 349 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 SRSF8Q9BRL6 282 aaKnown RBP14.3□□□□□ -0.12
COMMD4-208ENST00000563220 GGTLC1Q9BX51 225 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 PRELID1Q9Y255 219 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 DMRT1Q9Y5R6 373 aa14.3□□□□□ -0.12
COMMD4-208ENST00000563220 F11RQ9Y624 299 aaKnown RBP14.3□□□□□ -0.12
COMMD4-208ENST00000563220 IGKV1OR2-108A0A075B7D4 117 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 CCL20P78556 96 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 GUK1Q16774 197 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 SSX7Q7RTT5 188 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 SLC16A13Q7RTY0 426 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 RPP25LQ8N5L8 163 aaKnown RBP14.29□□□□□ -0.12
COMMD4-208ENST00000563220 SMDT1Q9H4I9 107 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 IGHV7-81A0A0B4J1V7 117 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 IGHV3-48P01763 117 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 OPRK1P41145 380 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 MIC13Q5XKP0 118 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 ARPC1AQ92747 370 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 SSX3Q99909 188 aa14.29□□□□□ -0.12
COMMD4-208ENST00000563220 ABCA1O95477 2261 aa14.28□□□□□ -0.12
COMMD4-208ENST00000563220 EIF3GO75821 320 aaKnown RBP eCLIP14.28□□□□□ -0.12
COMMD4-208ENST00000563220 ASPHD1Q5U4P2 390 aa14.28□□□□□ -0.12
COMMD4-208ENST00000563220 TMEM219Q86XT9 240 aa14.28□□□□□ -0.12
COMMD4-208ENST00000563220 SFT2D1Q8WV19 159 aa14.28□□□□□ -0.12
COMMD4-208ENST00000563220 MISP3Q96FF7 219 aa14.28□□□□□ -0.12
COMMD4-208ENST00000563220 RCC1LQ96I51 464 aaKnown RBP14.28□□□□□ -0.12
COMMD4-208ENST00000563220 RASL11BQ9BPW5 248 aa14.28□□□□□ -0.12
COMMD4-208ENST00000563220 PBDC1Q9BVG4 233 aa14.28□□□□□ -0.12
COMMD4-208ENST00000563220 WNT10AQ9GZT5 417 aa14.28□□□□□ -0.12
COMMD4-208ENST00000563220 MRPL36Q9P0J6 103 aaKnown RBP14.28□□□□□ -0.12
COMMD4-208ENST00000563220 CR1P17927 2039 aa14.28□□□□□ -0.12
COMMD4-208ENST00000563220 HLA-DRB1P01911 266 aa14.27□□□□□ -0.12
COMMD4-208ENST00000563220 EGR2P11161 476 aaPredicted RBP14.27□□□□□ -0.12
COMMD4-208ENST00000563220 GCSAMLQ5JQS6 135 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms