RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 PRCDQ00LT1 54 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 CNPY1Q3B7I2 92 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 CEMP1Q6PRD7 247 aaPredicted RBP8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 SNX29P2Q8IUI4 249 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 ZNF114Q8NC26 417 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 MRGPRFQ96AM1 343 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 PINX1Q96BK5 328 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 OR10C1Q96KK4 312 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 NXF2Q9GZY0 626 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 RBM38Q9H0Z9 239 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 SCPEP1Q9HB40 452 aa8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 RSL24D1Q9UHA3 163 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-213ENST00000557455 IGKV3-7A0A075B6H7 116 aa8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 ZNF701M0R085 212 aaPredicted RBP8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 IGHV3-48P01763 117 aa8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 UCP3P55916 312 aa8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 HSPE1P61604 102 aaKnown RBP8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 PAFAH1B2P68402 229 aa8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 ZNF124Q15973 351 aa8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 ZNF414Q96IQ9 312 aa8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 GINS3Q9BRX5 216 aa8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 CSTL1Q9H114 145 aa8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 PTTG2Q9NZH5 202 aa8.17□□□□□ -1.1
CCDC88C-213ENST00000557455 FRAS1Q86XX4 4008 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 IGHV3OR16-13A0A075B7E8 117 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 IGHV3-74A0A0B4J1X5 117 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 MPTX1A8MV57 137 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 M0QYG6 137 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 CD5P06127 495 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 PGAM2P15259 253 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 ELK1P19419 428 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 NCS1P62166 190 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 FAM90A2PQ658T7 463 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 CLVS1Q8IUQ0 354 aaPredicted RBP8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 GBGT1Q8N5D6 347 aa8.16□□□□□ -1.1
CCDC88C-213ENST00000557455 HPGDSO60760 199 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 SNCAP37840 140 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 NPBWR1P48145 328 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 AKR1C2P52895 323 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 VBP1P61758 197 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 SPINK9Q5DT21 86 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 TOMM20LQ6UXN7 152 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 TCF24Q7RTU0 167 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 DUSP18Q8NEJ0 188 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 GATAD1Q8WUU5 269 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 PHLDA1Q8WV24 401 aaPredicted RBP8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 ZNF486Q96H40 463 aaPredicted RBP8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 RARRES2Q99969 163 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 FUNDC2Q9BWH2 189 aa8.15□□□□□ -1.1
CCDC88C-213ENST00000557455 FAM25AB3EWG3 89 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 FAM25CB3EWG5 89 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 FAM25GB3EWG6 89 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 DNASE2O00115 360 aaPredicted RBP8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 ST8SIA3O43173 380 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 ATG12O94817 140 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 IFNA17P01571 189 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 RORCP51449 518 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 SUB1P53999 127 aaKnown RBP eCLIP8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 PIGPP57054 158 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 RND3P61587 244 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 IZUMO4Q1ZYL8 232 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 RNASE12Q5GAN4 147 aaKnown RBP8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 RNASE10Q5GAN6 216 aaKnown RBP8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 MZT2AQ6P582 158 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 ZNF600Q6ZNG1 722 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 SLC35G3Q8N808 338 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 ST8SIA2Q92186 375 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 PDCD10Q9BUL8 212 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 KLK11Q9UBX7 282 aa8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 PUS1Q9Y606 427 aaKnown RBP eCLIP8.14□□□□□ -1.11
CCDC88C-213ENST00000557455 A0A0B4J293 547 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 IGHV3-66A0A0C4DH42 116 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 DFFBO76075 338 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 TMEM50AO95807 157 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 CA1P00915 261 aaPredicted RBP8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 IGKV1-5P01602 117 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 APOHP02749 345 aaPredicted RBP8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 PI3P19957 117 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 TMBIM6P55061 237 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 RPL11P62913 178 aaKnown RBP8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 GPR107Q5VW38 600 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 LHFPL1Q86WI0 220 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 ARRDC1Q8N5I2 433 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 OR11H2Q8NH07 326 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 RAB2BQ8WUD1 216 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 TP53RKQ96S44 253 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 BCL7BQ9BQE9 202 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 MS4A6AQ9H2W1 248 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 TMEM231Q9H6L2 316 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 VSIRQ9H7M9 311 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 ZFAND3Q9H8U3 227 aa8.13□□□□□ -1.11
CCDC88C-213ENST00000557455 C3orf85A0A1B0GTC6 90 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 INS-IGF2F8WCM5 200 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 CORTO00230 105 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 CD3DP04234 171 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 ETV6P41212 452 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 HOXA1P49639 335 aaPredicted RBP8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 PPP5CP53041 499 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 DEFB131AP59861 70 aa8.12□□□□□ -1.11
CCDC88C-213ENST00000557455 TRIM16LQ309B1 348 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms