RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 TBPP20226 339 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 SUB1P53999 127 aaKnown RBP eCLIP9.47□□□□□ -0.89
LINC00643-202ENST00000553426 PIGPP57054 158 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 RND3P61587 244 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 TNFRSF9Q07011 255 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 DEFB135Q30KP9 77 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 ODF3L2Q3SX64 289 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 SLC35G3Q8N808 338 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 CCDC71LQ8N9Z2 235 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 DUSP18Q8NEJ0 188 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 ZFAND1Q8TCF1 268 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 NXF2Q9GZY0 626 aaKnown RBP9.47□□□□□ -0.89
LINC00643-202ENST00000553426 COPZ2Q9P299 210 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 FRAS1Q86XX4 4008 aa9.47□□□□□ -0.89
LINC00643-202ENST00000553426 A0A0J9YWU9 116 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 NUPR2A6NF83 97 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 CHEK1O14757 476 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 SCGB2A1O75556 95 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 IFNA17P01571 189 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 IGKV1-39P01597 117 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 IGKV1D-39P04432 117 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 ZNF182P17025 639 aaPredicted RBP9.46□□□□□ -0.9
LINC00643-202ENST00000553426 RPL35AP18077 110 aaKnown RBP9.46□□□□□ -0.9
LINC00643-202ENST00000553426 PMS2P11Q13670 270 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 RNASE12Q5GAN4 147 aaKnown RBP9.46□□□□□ -0.9
LINC00643-202ENST00000553426 LYG2Q86SG7 212 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 RNASE11Q8TAA1 199 aaKnown RBP9.46□□□□□ -0.9
LINC00643-202ENST00000553426 RRNAD1Q96FB5 475 aaKnown RBP9.46□□□□□ -0.9
LINC00643-202ENST00000553426 OR10C1Q96KK4 312 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 RNF2Q99496 336 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 ENY2Q9NPA8 101 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 EXTL2Q9UBQ6 330 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 KLK11Q9UBX7 282 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 PCLOQ9Y6V0 5065 aa9.46□□□□□ -0.9
LINC00643-202ENST00000553426 C3orf85A0A1B0GTC6 90 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 CORTO00230 105 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 B3GALNT1O75752 331 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 IGHV3-48P01763 117 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 CD3DP04234 171 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 PI3P19957 117 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 TFPI2P48307 235 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 TRIM16LQ309B1 348 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 OR52I2Q8NH67 350 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 RNF183Q96D59 192 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 TMEM231Q9H6L2 316 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 MTFP1Q9UDX5 166 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 ALMS1Q8TCU4 4167 aa9.45□□□□□ -0.9
LINC00643-202ENST00000553426 IGKV3-7A0A075B6H7 116 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 IGHV3-49A0A0A0MS15 119 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 DNASE2O00115 360 aaPredicted RBP9.44□□□□□ -0.9
LINC00643-202ENST00000553426 ATF4P18848 351 aaPredicted RBP9.44□□□□□ -0.9
LINC00643-202ENST00000553426 HOXA1P49639 335 aaPredicted RBP9.44□□□□□ -0.9
LINC00643-202ENST00000553426 PPP5CP53041 499 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 TAS2R19P59542 299 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 RPL11P62913 178 aaKnown RBP9.44□□□□□ -0.9
LINC00643-202ENST00000553426 SCGB2B2Q4G0G5 96 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 SPINK9Q5DT21 86 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 ZNF600Q6ZNG1 722 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 TCF24Q7RTU0 167 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 LHFPL1Q86WI0 220 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 APRG1Q8IVJ8 170 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 TERB2Q8NHR7 220 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 CSTL1Q9H114 145 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 MAP6D1Q9H9H5 199 aa9.44□□□□□ -0.9
LINC00643-202ENST00000553426 KLK5Q9Y337 293 aaPredicted RBP9.44□□□□□ -0.9
LINC00643-202ENST00000553426 IGHV3OR16-13A0A075B7E8 117 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 IGHV3-74A0A0B4J1X5 117 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 A0A0B4J293 547 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 A0A1W2PS18 150 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 MPTX1A8MV57 137 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 INS-IGF2F8WCM5 200 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 ST8SIA3O43173 380 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 GABARAPO95166 117 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 RAB3DO95716 219 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 IGKV1-5P01602 117 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 SSBP1Q04837 148 aaKnown RBP9.43□□□□□ -0.9
LINC00643-202ENST00000553426 CTF1Q16619 201 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 IZUMO4Q1ZYL8 232 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 TOMM20LQ6UXN7 152 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 GBGT1Q8N5D6 347 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 TMEM229BQ8NBD8 167 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 TP53RKQ96S44 253 aa9.43□□□□□ -0.9
LINC00643-202ENST00000553426 RGS5O15539 181 aa9.42□□□□□ -0.9
LINC00643-202ENST00000553426 OPRK1P41145 380 aa9.42□□□□□ -0.9
LINC00643-202ENST00000553426 ETV6P41212 452 aa9.42□□□□□ -0.9
LINC00643-202ENST00000553426 MRPS10P82664 201 aaKnown RBP9.42□□□□□ -0.9
LINC00643-202ENST00000553426 MEF2DQ14814 521 aa9.42□□□□□ -0.9
LINC00643-202ENST00000553426 GPR107Q5VW38 600 aa9.42□□□□□ -0.9
LINC00643-202ENST00000553426 STEAP1BQ6NZ63 245 aa9.42□□□□□ -0.9
LINC00643-202ENST00000553426 GATAD1Q8WUU5 269 aa9.42□□□□□ -0.9
LINC00643-202ENST00000553426 NARS2Q96I59 477 aaKnown RBP9.42□□□□□ -0.9
LINC00643-202ENST00000553426 C14orf166Q9Y224 244 aaKnown RBP9.42□□□□□ -0.9
LINC00643-202ENST00000553426 PUS1Q9Y606 427 aaKnown RBP eCLIP9.42□□□□□ -0.9
LINC00643-202ENST00000553426 GABARAPH6UMI1 98 aa9.41□□□□□ -0.9
LINC00643-202ENST00000553426 DFFBO76075 338 aa9.41□□□□□ -0.9
LINC00643-202ENST00000553426 TMEM50AO95807 157 aa9.41□□□□□ -0.9
LINC00643-202ENST00000553426 LY6G6CO95867 125 aa9.41□□□□□ -0.9
LINC00643-202ENST00000553426 CD74P04233 296 aa9.41□□□□□ -0.9
LINC00643-202ENST00000553426 P0C879 139 aa9.41□□□□□ -0.9
LINC00643-202ENST00000553426 NPPCP23582 126 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms