RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 MT-CO2P00403 227 aa9.41□□□□□ -0.9
PTCH1-221ENST00000550914 EIF4EP06730 217 aaKnown RBP9.41□□□□□ -0.9
PTCH1-221ENST00000550914 PRSS3P35030 304 aa9.41□□□□□ -0.9
PTCH1-221ENST00000550914 HRH1P35367 487 aa9.41□□□□□ -0.9
PTCH1-221ENST00000550914 TFPI2P48307 235 aa9.41□□□□□ -0.9
PTCH1-221ENST00000550914 NANOS2P60321 138 aaKnown RBP9.41□□□□□ -0.9
PTCH1-221ENST00000550914 H2BFWTQ7Z2G1 175 aa9.41□□□□□ -0.9
PTCH1-221ENST00000550914 OR4A16Q8NH70 328 aa9.41□□□□□ -0.9
PTCH1-221ENST00000550914 C2CD4CQ8TF44 421 aa9.41□□□□□ -0.9
PTCH1-221ENST00000550914 IGHV3-49A0A0A0MS15 119 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 NPBWR1P48145 328 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 UCP3P55916 312 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 HSPE1P61604 102 aaKnown RBP9.4□□□□□ -0.9
PTCH1-221ENST00000550914 ERHP84090 104 aaKnown RBP9.4□□□□□ -0.9
PTCH1-221ENST00000550914 TMEM187Q14656 261 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 PHLDA2Q53GA4 152 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 TOMM20LQ6UXN7 152 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 TCF24Q7RTU0 167 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 LYSMD2Q8IV50 215 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 GBGT1Q8N5D6 347 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 SAMD12Q8N8I0 201 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 HRH4Q9H3N8 390 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 FBXL17Q9UF56 701 aa9.4□□□□□ -0.9
PTCH1-221ENST00000550914 IGKV3-7A0A075B6H7 116 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 C11orf94C9JXX5 98 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 INS-IGF2F8WCM5 200 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 CA1P00915 261 aaPredicted RBP9.39□□□□□ -0.91
PTCH1-221ENST00000550914 IGKV1-39P01597 117 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 IGKV1D-39P04432 117 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 TSPAN5P62079 268 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 NEDD8Q15843 81 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 TMEM41BQ5BJD5 291 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 ZNF600Q6ZNG1 722 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 TBC1D26Q86UD7 250 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 DUSP18Q8NEJ0 188 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 GPX8Q8TED1 209 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 ST8SIA2Q92186 375 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 MS4A6AQ9H2W1 248 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 TMEM231Q9H6L2 316 aa9.39□□□□□ -0.91
PTCH1-221ENST00000550914 IGHV3OR16-13A0A075B7E8 117 aa9.38□□□□□ -0.91
PTCH1-221ENST00000550914 IGHV3-74A0A0B4J1X5 117 aa9.38□□□□□ -0.91
PTCH1-221ENST00000550914 DNASE2O00115 360 aaPredicted RBP9.38□□□□□ -0.91
PTCH1-221ENST00000550914 ST8SIA3O43173 380 aa9.38□□□□□ -0.91
PTCH1-221ENST00000550914 ATP6V1G2O95670 118 aa9.38□□□□□ -0.91
PTCH1-221ENST00000550914 HLA-DMAP28067 261 aa9.38□□□□□ -0.91
PTCH1-221ENST00000550914 RPS19P39019 145 aaKnown RBP9.38□□□□□ -0.91
PTCH1-221ENST00000550914 KCTD21Q4G0X4 260 aa9.38□□□□□ -0.91
PTCH1-221ENST00000550914 MRGPRFQ96AM1 343 aa9.38□□□□□ -0.91
PTCH1-221ENST00000550914 PINX1Q96BK5 328 aaKnown RBP9.38□□□□□ -0.91
PTCH1-221ENST00000550914 ZFAND3Q9H8U3 227 aa9.38□□□□□ -0.91
PTCH1-221ENST00000550914 SCPEP1Q9HB40 452 aa9.38□□□□□ -0.91
PTCH1-221ENST00000550914 A0A1W2PS18 150 aa9.37□□□□□ -0.91
PTCH1-221ENST00000550914 CORTO00230 105 aa9.37□□□□□ -0.91
PTCH1-221ENST00000550914 IGHV3-48P01763 117 aa9.37□□□□□ -0.91
PTCH1-221ENST00000550914 SNCAP37840 140 aa9.37□□□□□ -0.91
PTCH1-221ENST00000550914 DEFB131AP59861 70 aa9.37□□□□□ -0.91
PTCH1-221ENST00000550914 PVRIGQ6DKI7 326 aa9.37□□□□□ -0.91
PTCH1-221ENST00000550914 STHQ8IWL8 128 aa9.37□□□□□ -0.91
PTCH1-221ENST00000550914 LILRB2Q8N423 598 aa9.37□□□□□ -0.91
PTCH1-221ENST00000550914 Q8NAQ8 132 aa9.37□□□□□ -0.91
PTCH1-221ENST00000550914 PUS1Q9Y606 427 aaKnown RBP eCLIP9.37□□□□□ -0.91
PTCH1-221ENST00000550914 PCLOQ9Y6V0 5065 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 SMIM31A0A1B0GVY4 71 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 TMEM50AO95807 157 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 APOA1P02647 267 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 APOHP02749 345 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-221ENST00000550914 RCVRNP35243 200 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 TGFBR1P36897 503 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 SUB1P53999 127 aaKnown RBP eCLIP9.36□□□□□ -0.91
PTCH1-221ENST00000550914 RND3P61587 244 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 PRR20EP86478 221 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 PRR20CP86479 221 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 PRR20DP86480 221 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 PRR20BP86481 221 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 PRR20AP86496 221 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 LEMD1Q68G75 181 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 ZNF486Q96H40 463 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-221ENST00000550914 GRAMD2BQ96HH9 432 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 APLNQ9ULZ1 77 aa9.36□□□□□ -0.91
PTCH1-221ENST00000550914 DEFB4AO15263 64 aa9.35□□□□□ -0.91
PTCH1-221ENST00000550914 SCGB2A1O75556 95 aa9.35□□□□□ -0.91
PTCH1-221ENST00000550914 ATG12O94817 140 aa9.35□□□□□ -0.91
PTCH1-221ENST00000550914 P0C879 139 aa9.35□□□□□ -0.91
PTCH1-221ENST00000550914 SPP1P10451 314 aa9.35□□□□□ -0.91
PTCH1-221ENST00000550914 MIFP14174 115 aa9.35□□□□□ -0.91
PTCH1-221ENST00000550914 NPPCP23582 126 aa9.35□□□□□ -0.91
PTCH1-221ENST00000550914 RPL11P62913 178 aaKnown RBP9.35□□□□□ -0.91
PTCH1-221ENST00000550914 MORN3Q6PF18 240 aaPredicted RBP9.35□□□□□ -0.91
PTCH1-221ENST00000550914 TRPT1Q86TN4 253 aaKnown RBP9.35□□□□□ -0.91
PTCH1-221ENST00000550914 SLC35G3Q8N808 338 aa9.35□□□□□ -0.91
PTCH1-221ENST00000550914 KIAA1109Q2LD37 5005 aa9.34□□□□□ -0.91
PTCH1-221ENST00000550914 A0A0B4J293 547 aa9.34□□□□□ -0.91
PTCH1-221ENST00000550914 A0A1B0GU03 582 aa9.34□□□□□ -0.91
PTCH1-221ENST00000550914 ZNF705EA8MWA4 302 aaPredicted RBP9.34□□□□□ -0.91
PTCH1-221ENST00000550914 IGLL5B9A064 214 aa9.34□□□□□ -0.91
PTCH1-221ENST00000550914 K7EQG2 157 aa9.34□□□□□ -0.91
PTCH1-221ENST00000550914 CLN5O75503 358 aa9.34□□□□□ -0.91
PTCH1-221ENST00000550914 IGKV1-5P01602 117 aa9.34□□□□□ -0.91
PTCH1-221ENST00000550914 GIG44P09565 113 aaPredicted RBP9.34□□□□□ -0.91
PTCH1-221ENST00000550914 CRYBB3P26998 211 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms