RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 MOSP00540 346 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 CA2P00918 260 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 PLA2G1BP04054 148 aaKnown RBP4.97□□□□□ -1.61
SYNE1-239ENST00000545694 FBP1P09467 338 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 SFTA3P0C7M3 94 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 RNASE2P10153 161 aaKnown RBP4.97□□□□□ -1.61
SYNE1-239ENST00000545694 BCL2P10415 239 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 GATA3P23771 443 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 BRS3P32247 399 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 RPL27AP46776 148 aaKnown RBP4.97□□□□□ -1.61
SYNE1-239ENST00000545694 REG1BP48304 166 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 LMO4P61968 165 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 DEFA5Q01523 94 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 AKR1C1Q04828 323 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 CD69Q07108 199 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 PSG5Q15238 335 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 RHEBQ15382 184 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 FAM74A3Q4VXF1 159 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 SOHLH1Q5JUK2 328 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 ZNF843Q8N446 348 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 RPP25LQ8N5L8 163 aaKnown RBP4.97□□□□□ -1.61
SYNE1-239ENST00000545694 NPBQ8NG41 125 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 OR10G9Q8NGN4 311 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 OR10G7Q8NGN6 311 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 OR1P1Q8NH06 330 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 CLDND2Q8NHS1 167 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 EAF1Q96JC9 268 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-239ENST00000545694 SPATA25Q9BR10 227 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 HINT2Q9BX68 163 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 MAP1LC3BQ9GZQ8 125 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 SIRPDQ9H106 197 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 ZNF430Q9H8G1 570 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-239ENST00000545694 VAX2Q9UIW0 290 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 PRELID1Q9Y255 219 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 SIGLEC9Q9Y336 463 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 CREBBPQ92793 2442 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 USP9YO00507 2555 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-239ENST00000545694 PTPN13Q12923 2485 aa4.97□□□□□ -1.61
SYNE1-239ENST00000545694 CENPEQ02224 2701 aa4.96□□□□□ -1.61
SYNE1-239ENST00000545694 LOC102723971A0A1B0GUV8 181 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 A0A1W2PPV4 95 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 VWC2LB2RUY7 222 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 B4DEV8 164 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 AGPAT2O15120 278 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 NBR2O15453 112 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 C1QL1O75973 258 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 TOX4O94842 621 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 VENTXO95231 258 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 IGHV4-39P01824 125 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 FABP1P07148 127 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 COX6B1P14854 86 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 SLC25A16P16260 332 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 COX7A1P24310 79 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 PAX6P26367 422 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 CDC34P49427 236 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-239ENST00000545694 FHITP49789 147 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 RHOBP62745 196 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 PNRC1Q12796 327 aaPredicted RBP4.96□□□□□ -1.62
SYNE1-239ENST00000545694 HNF4GQ14541 408 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 SPINK9Q5DT21 86 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 VMO1Q7Z5L0 202 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 SLC35E3Q7Z769 313 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 S100A7AQ86SG5 101 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 C10orf105Q8TEF2 133 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 TMEM170AQ8WVE7 144 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 CFHR4Q92496 578 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 TMEM68Q96MH6 324 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 GGTLC1Q9BX51 225 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 BPESC1Q9GZL8 116 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 NARFLQ9H6Q4 476 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 TUBA4BQ9H853 241 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 ZNRD1Q9P1U0 126 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 METTL1Q9UBP6 276 aaKnown RBP4.96□□□□□ -1.62
SYNE1-239ENST00000545694 PXMP4Q9Y6I8 212 aa4.96□□□□□ -1.62
SYNE1-239ENST00000545694 CHD6Q8TD26 2715 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 IGLC7A0M8Q6 106 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 TIMM23O14925 209 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 HMGB3O15347 200 aaKnown RBP4.95□□□□□ -1.62
SYNE1-239ENST00000545694 PDE6DO43924 150 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 CLN5O75503 358 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 SCGB2A1O75556 95 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 LY6HO94772 140 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 CXorf1O96002 111 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 CRYGCP07315 174 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 SRP19P09132 144 aaKnown RBP4.95□□□□□ -1.62
SYNE1-239ENST00000545694 FAM106CPP0CH98 169 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 OR13C7P0DN81 318 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 ADCYAP1P18509 176 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 ELLP55199 621 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-239ENST00000545694 ATP5J2P56134 94 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 TAS2R45P59539 299 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 BPIFB3P59826 476 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 B2MP61769 119 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 MEF2BQ02080 365 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-239ENST00000545694 PAX8Q06710 450 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 DIAPH2-AS1Q14236 149 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 ICAM4Q14773 271 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 PLGLAQ15195 96 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 TNXAQ16473 311 aa4.95□□□□□ -1.62
SYNE1-239ENST00000545694 HCP5Q6MZN7 132 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms