RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TM4SF20Q53R12 229 aa10.69□□□□□ -0.7
USP28-209ENST00000540925 OR52E5Q8NH55 327 aa10.69□□□□□ -0.7
USP28-209ENST00000540925 DEDD2Q8WXF8 326 aa10.69□□□□□ -0.7
USP28-209ENST00000540925 IL22RA2Q969J5 263 aa10.69□□□□□ -0.7
USP28-209ENST00000540925 ASCL2Q99929 193 aa10.69□□□□□ -0.7
USP28-209ENST00000540925 U3KQK5 164 aa10.69□□□□□ -0.7
USP28-209ENST00000540925 IGHV3-35A0A0C4DH35 117 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 ZNF320A2RRD8 509 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 NDUFA4O00483 81 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 RNASE2P10153 161 aaKnown RBP10.68□□□□□ -0.7
USP28-209ENST00000540925 S100A5P33763 92 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 ERHP84090 104 aaKnown RBP10.68□□□□□ -0.7
USP28-209ENST00000540925 PYDC2Q56P42 97 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 SPINK9Q5DT21 86 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 UXS1Q8NBZ7 420 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 MARC2Q969Z3 335 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 RRNAD1Q96FB5 475 aaKnown RBP10.68□□□□□ -0.7
USP28-209ENST00000540925 SCGB3A2Q96PL1 93 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 TXN2Q99757 166 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 SRRQ9GZT4 340 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 MCUBQ9NWR8 336 aa10.68□□□□□ -0.7
USP28-209ENST00000540925 MT-CO2P00403 227 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 TMEM268Q5VZI3 342 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 LINC00322Q6ZN03 302 aaPredicted RBP10.67□□□□□ -0.7
USP28-209ENST00000540925 SGPP2Q8IWX5 399 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 TMEM61Q8N0U2 210 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 TOMM5Q8N4H5 51 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 SLC35G3Q8N808 338 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 DYNLRB2Q8TF09 96 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 GPR146Q96CH1 333 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 WDR89Q96FK6 387 aaPredicted RBP10.67□□□□□ -0.7
USP28-209ENST00000540925 TM2D3Q9BRN9 247 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 PALMDQ9NP74 551 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 MRPL27Q9P0M9 148 aaKnown RBP10.67□□□□□ -0.7
USP28-209ENST00000540925 UFC1Q9Y3C8 167 aa10.67□□□□□ -0.7
USP28-209ENST00000540925 IFNA17P01571 189 aa10.66□□□□□ -0.7
USP28-209ENST00000540925 FAUP35544 74 aaKnown RBP10.66□□□□□ -0.7
USP28-209ENST00000540925 MFAP4P55083 255 aa10.66□□□□□ -0.7
USP28-209ENST00000540925 AP3S2P59780 193 aa10.66□□□□□ -0.7
USP28-209ENST00000540925 SPCS3P61009 180 aa10.66□□□□□ -0.7
USP28-209ENST00000540925 NMSQ5H8A3 153 aa10.66□□□□□ -0.7
USP28-209ENST00000540925 GTSCR1Q86UQ5 136 aa10.66□□□□□ -0.7
USP28-209ENST00000540925 MISP3Q96FF7 219 aa10.66□□□□□ -0.7
USP28-209ENST00000540925 WWC2-AS2Q96NR7 200 aa10.66□□□□□ -0.7
USP28-209ENST00000540925 SDHCQ99643 169 aaPredicted RBP10.66□□□□□ -0.7
USP28-209ENST00000540925 DAZ1Q9NQZ3 744 aaKnown RBP10.66□□□□□ -0.7
USP28-209ENST00000540925 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.66□□□□□ -0.7
USP28-209ENST00000540925 GAR1Q9NY12 217 aaKnown RBP10.66□□□□□ -0.7
USP28-209ENST00000540925 DYNC2H1Q8NCM8 4307 aaKnown RBP10.65□□□□□ -0.7
USP28-209ENST00000540925 C15orf62A8K5M9 175 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 K7EMT4 169 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 CD7P09564 240 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 Q56UQ5 140 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 SPANXN2Q5MJ10 180 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 ZNF57Q68EA5 555 aaPredicted RBP10.65□□□□□ -0.7
USP28-209ENST00000540925 BTNL8Q6UX41 500 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 OR10C1Q96KK4 312 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 NEURL2Q9BR09 285 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 FNDC4Q9H6D8 234 aaPredicted RBP10.65□□□□□ -0.7
USP28-209ENST00000540925 PRR13Q9NZ81 148 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 CACNG5Q9UF02 275 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 KCNIP3Q9Y2W7 256 aa10.65□□□□□ -0.7
USP28-209ENST00000540925 TRAV25A0A0B4J276 109 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 A0A0B4J2A0 478 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 IGHV3-48P01763 117 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 AKR1C4P17516 323 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 SNCAP37840 140 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 CD81P60033 236 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 BAK1Q16611 211 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 UBAC2Q8NBM4 344 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 RNASE11Q8TAA1 199 aaKnown RBP10.64□□□□□ -0.71
USP28-209ENST00000540925 TMEM170AQ8WVE7 144 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 SLC25A21Q9BQT8 299 aaPredicted RBP10.64□□□□□ -0.71
USP28-209ENST00000540925 PDCD10Q9BUL8 212 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 MRPL36Q9P0J6 103 aaKnown RBP10.64□□□□□ -0.71
USP28-209ENST00000540925 SHPKQ9UHJ6 478 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 SELENOKQ9Y6D0 94 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 CSMD3Q7Z407 3707 aa10.64□□□□□ -0.71
USP28-209ENST00000540925 CORTO00230 105 aa10.63□□□□□ -0.71
USP28-209ENST00000540925 HOXA1P49639 335 aaPredicted RBP10.63□□□□□ -0.71
USP28-209ENST00000540925 RELQ04864 619 aaPredicted RBP10.63□□□□□ -0.71
USP28-209ENST00000540925 HAGHQ16775 308 aa10.63□□□□□ -0.71
USP28-209ENST00000540925 TMEM128Q5BJH2 165 aa10.63□□□□□ -0.71
USP28-209ENST00000540925 LYZL2Q7Z4W2 148 aa10.63□□□□□ -0.71
USP28-209ENST00000540925 PINX1Q96BK5 328 aaKnown RBP10.63□□□□□ -0.71
USP28-209ENST00000540925 RCHY1Q96PM5 261 aa10.63□□□□□ -0.71
USP28-209ENST00000540925 NDUFA13Q9P0J0 144 aa10.63□□□□□ -0.71
USP28-209ENST00000540925 STARD9Q9P2P6 4700 aa10.63□□□□□ -0.71
USP28-209ENST00000540925 SACSQ9NZJ4 4579 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 IGHV3OR16-8A0A075B7F1 116 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 TSPAN4O14817 238 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 NUPL2O15504 423 aaKnown RBP10.62□□□□□ -0.71
USP28-209ENST00000540925 SULT1A3P0DMM9 295 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 SULT1A4P0DMN0 295 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 HTR2BP41595 481 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 SUB1P53999 127 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP28-209ENST00000540925 SRPXP78539 464 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 GUCA2BQ16661 112 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 C2orf83Q53S99 150 aa10.62□□□□□ -0.71
USP28-209ENST00000540925 DEFB125Q8N687 156 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms