RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 GAGE12JA6NER3 117 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 CCL16O15467 120 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 GAGE7O76087 117 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 MT-ATP8P03928 68 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 GAGE12FP0CL80 117 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 GAGE12GP0CL81 117 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 GAGE12IP0CL82 117 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 NTF4P34130 210 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 GAGE4Q13068 117 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 PSG5Q15238 335 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 ABHD17BQ5VST6 288 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 MKXQ8IYA7 352 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 ZNF441Q8N8Z8 693 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 OR9G1Q8NH87 305 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 PIFOQ8TCI5 191 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 PHLDA1Q8WV24 401 aaPredicted RBP10.22□□□□□ -0.77
USP3-203ENST00000538686 FAM168AQ92567 244 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 MPC1Q9Y5U8 109 aa10.22□□□□□ -0.77
USP3-203ENST00000538686 A8MWL6 223 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 MYF5P13349 255 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 ZNF146Q15072 292 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 CT83Q5H943 113 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 FAM27BQ5VT28 67 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 ZNF808Q8N4W9 903 aaPredicted RBP10.21□□□□□ -0.77
USP3-203ENST00000538686 IL1F10Q8WWZ1 152 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 C20orf78Q9BR46 151 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 TMEM133Q9H2Q1 129 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 AP5S1Q9NUS5 200 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 TMEM140Q9NV12 185 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 PRO0461Q9UI25 63 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 SPAG17Q6Q759 2223 aa10.21□□□□□ -0.77
USP3-203ENST00000538686 A0A1W2PQU0 124 aa10.21□□□□□ -0.78
USP3-203ENST00000538686 FAM90A9PA6NNJ1 464 aa10.21□□□□□ -0.78
USP3-203ENST00000538686 SYNGR3O43761 229 aa10.21□□□□□ -0.78
USP3-203ENST00000538686 GCSHP23434 173 aa10.21□□□□□ -0.78
USP3-203ENST00000538686 FOXA3P55318 350 aaPredicted RBP10.21□□□□□ -0.78
USP3-203ENST00000538686 RPS16P62249 146 aaKnown RBP10.21□□□□□ -0.78
USP3-203ENST00000538686 SRSF1Q07955 248 aaKnown RBP eCLIP10.21□□□□□ -0.78
USP3-203ENST00000538686 TMEM92Q6UXU6 159 aa10.21□□□□□ -0.78
USP3-203ENST00000538686 ACP7Q6ZNF0 438 aa10.21□□□□□ -0.78
USP3-203ENST00000538686 BCL6BQ8N143 479 aaPredicted RBP10.21□□□□□ -0.78
USP3-203ENST00000538686 GCM1Q9NP62 436 aa10.21□□□□□ -0.78
USP3-203ENST00000538686 IGKV3D-11A0A0A0MRZ8 115 aa10.2□□□□□ -0.78
USP3-203ENST00000538686 A0A1B0GWB2 263 aa10.2□□□□□ -0.78
USP3-203ENST00000538686 H3BMG7 143 aa10.2□□□□□ -0.78
USP3-203ENST00000538686 FOXH1O75593 365 aa10.2□□□□□ -0.78
USP3-203ENST00000538686 CR1LQ2VPA4 569 aa10.2□□□□□ -0.78
USP3-203ENST00000538686 KRTAP27-1Q3LI81 207 aa10.2□□□□□ -0.78
USP3-203ENST00000538686 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.2□□□□□ -0.78
USP3-203ENST00000538686 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.2□□□□□ -0.78
USP3-203ENST00000538686 SMRP1Q8NCR6 262 aa10.2□□□□□ -0.78
USP3-203ENST00000538686 IGLL5B9A064 214 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 HSPB6O14558 160 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 Q6AWC8 147 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 LILRA6Q6PI73 481 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 TRAT1Q6PIZ9 186 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 MCRIP2Q9BUT9 160 aaKnown RBP10.19□□□□□ -0.78
USP3-203ENST00000538686 GFRA4Q9GZZ7 299 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 EP400Q96L91 3159 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 A0A1W2PP55 124 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 GGTLC3B5MD39 225 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 PRSS46E5RG02 174 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 TMEM262E9PQX1 116 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 FNDC10F2Z333 226 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 MGST3O14880 152 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 XGP55808 180 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 C20orf204Q6ZNR8 217 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 FAM214BQ7L5A3 538 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 DDB2Q92466 427 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 TMUB1Q9BVT8 246 aa10.19□□□□□ -0.78
USP3-203ENST00000538686 PRRC2BQ5JSZ5 2229 aaKnown RBP10.19□□□□□ -0.78
USP3-203ENST00000538686 NCKAP5O14513 1909 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 A0A1W2PQM1 296 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 SHISA8B8ZZ34 492 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 CHEK1O14757 476 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 FXYD2P54710 66 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 TCTAP57738 103 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 ZNF816Q0VGE8 651 aaPredicted RBP10.18□□□□□ -0.78
USP3-203ENST00000538686 IGF2-ASQ6U949 168 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 RPRMLQ8N4K4 120 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 CCL4L1Q8NHW4 92 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 MBNL3Q9NUK0 354 aaKnown RBP10.18□□□□□ -0.78
USP3-203ENST00000538686 POLDIP2Q9Y2S7 368 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 TMEM8BA6NDV4 472 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 FABP5P3A8MUU1 101 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 INSL3P51460 131 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 TAL2Q16559 108 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 PEAR1Q5VY43 1037 aaPredicted RBP10.18□□□□□ -0.78
USP3-203ENST00000538686 Q6ZR03 302 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 OSR1Q8TAX0 266 aaPredicted RBP10.18□□□□□ -0.78
USP3-203ENST00000538686 SSMEM1Q8WWF3 244 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 IL23AQ9NPF7 189 aa10.18□□□□□ -0.78
USP3-203ENST00000538686 KIR2DS5A0A0G2JLQ3 304 aa10.17□□□□□ -0.78
USP3-203ENST00000538686 A0A0G2JNG1 304 aa10.17□□□□□ -0.78
USP3-203ENST00000538686 CENPVL3A0A0U1RRI6 287 aa10.17□□□□□ -0.78
USP3-203ENST00000538686 TCRBV4S1A1TA0A5B7 111 aa10.17□□□□□ -0.78
USP3-203ENST00000538686 KIR2DS3K7RE56 304 aa10.17□□□□□ -0.78
USP3-203ENST00000538686 EFNA2O43921 213 aa10.17□□□□□ -0.78
USP3-203ENST00000538686 PRR20EP86478 221 aa10.17□□□□□ -0.78
USP3-203ENST00000538686 PRR20CP86479 221 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms