RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RORCP51449 518 aa10.92□□□□□ -0.66
VPS28-215ENST00000531924 VBP1P61758 197 aa10.92□□□□□ -0.66
VPS28-215ENST00000531924 APRG1Q8IVJ8 170 aa10.92□□□□□ -0.66
VPS28-215ENST00000531924 SLC35G3Q8N808 338 aa10.92□□□□□ -0.66
VPS28-215ENST00000531924 DUSP18Q8NEJ0 188 aa10.92□□□□□ -0.66
VPS28-215ENST00000531924 PDCD10Q9BUL8 212 aa10.92□□□□□ -0.66
VPS28-215ENST00000531924 FUNDC2Q9BWH2 189 aa10.92□□□□□ -0.66
VPS28-215ENST00000531924 NXF2Q9GZY0 626 aaKnown RBP10.92□□□□□ -0.66
VPS28-215ENST00000531924 BIRC6Q9NR09 4857 aa10.92□□□□□ -0.66
VPS28-215ENST00000531924 ALMS1Q8TCU4 4167 aa10.92□□□□□ -0.66
VPS28-215ENST00000531924 PLECQ15149 4684 aaKnown RBP10.91□□□□□ -0.66
VPS28-215ENST00000531924 IGHV3OR16-13A0A075B7E8 117 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 IGHV3-74A0A0B4J1X5 117 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 MPTX1A8MV57 137 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 IFNA17P01571 189 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 CD5P06127 495 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 ELK1P19419 428 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 AKR1C2P52895 323 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 SUB1P53999 127 aaKnown RBP eCLIP10.91□□□□□ -0.66
VPS28-215ENST00000531924 RPL11P62913 178 aaKnown RBP10.91□□□□□ -0.66
VPS28-215ENST00000531924 RNASE12Q5GAN4 147 aaKnown RBP10.91□□□□□ -0.66
VPS28-215ENST00000531924 RNASE10Q5GAN6 216 aaKnown RBP10.91□□□□□ -0.66
VPS28-215ENST00000531924 CEMP1Q6PRD7 247 aaPredicted RBP10.91□□□□□ -0.66
VPS28-215ENST00000531924 GBGT1Q8N5D6 347 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 ZNF114Q8NC26 417 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 RNASE11Q8TAA1 199 aaKnown RBP10.91□□□□□ -0.66
VPS28-215ENST00000531924 LINC00476Q8WZB0 136 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 AP3S1Q92572 193 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 CSTL1Q9H114 145 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 MAP6D1Q9H9H5 199 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 ENY2Q9NPA8 101 aa10.91□□□□□ -0.66
VPS28-215ENST00000531924 DNASE2O00115 360 aaPredicted RBP10.9□□□□□ -0.66
VPS28-215ENST00000531924 IGKV1-39P01597 117 aa10.9□□□□□ -0.66
VPS28-215ENST00000531924 IGKV1D-39P04432 117 aa10.9□□□□□ -0.66
VPS28-215ENST00000531924 PI3P19957 117 aa10.9□□□□□ -0.66
VPS28-215ENST00000531924 FCGR2BP31994 310 aaPredicted RBP10.9□□□□□ -0.66
VPS28-215ENST00000531924 TRIM16LQ309B1 348 aa10.9□□□□□ -0.66
VPS28-215ENST00000531924 SPINK9Q5DT21 86 aa10.9□□□□□ -0.66
VPS28-215ENST00000531924 ZNF486Q96H40 463 aaPredicted RBP10.9□□□□□ -0.66
VPS28-215ENST00000531924 OR10C1Q96KK4 312 aa10.9□□□□□ -0.66
VPS28-215ENST00000531924 ST8SIA3O43173 380 aa10.89□□□□□ -0.67
VPS28-215ENST00000531924 SCGB2A1O75556 95 aa10.89□□□□□ -0.67
VPS28-215ENST00000531924 ATF4P18848 351 aaPredicted RBP10.89□□□□□ -0.67
VPS28-215ENST00000531924 HOXA1P49639 335 aaPredicted RBP10.89□□□□□ -0.67
VPS28-215ENST00000531924 PIGPP57054 158 aa10.89□□□□□ -0.67
VPS28-215ENST00000531924 TCF24Q7RTU0 167 aa10.89□□□□□ -0.67
VPS28-215ENST00000531924 RRNAD1Q96FB5 475 aaKnown RBP10.89□□□□□ -0.67
VPS28-215ENST00000531924 TMEM231Q9H6L2 316 aa10.89□□□□□ -0.67
VPS28-215ENST00000531924 COPZ2Q9P299 210 aa10.89□□□□□ -0.67
VPS28-215ENST00000531924 CORTO00230 105 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 TBPP20226 339 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 RND3P61587 244 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 EWSR1Q01844 656 aaKnown RBP eCLIP10.88□□□□□ -0.67
VPS28-215ENST00000531924 IZUMO4Q1ZYL8 232 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 TOMM20LQ6UXN7 152 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 ZNF600Q6ZNG1 722 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 ARRDC1Q8N5I2 433 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 CCDC71LQ8N9Z2 235 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 ZFAND1Q8TCF1 268 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 C15orf40Q8WUR7 153 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 GATAD1Q8WUU5 269 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 RARRES2Q99969 163 aa10.88□□□□□ -0.67
VPS28-215ENST00000531924 IGHV3-66A0A0C4DH42 116 aa10.87□□□□□ -0.67
VPS28-215ENST00000531924 C3orf85A0A1B0GTC6 90 aa10.87□□□□□ -0.67
VPS28-215ENST00000531924 CD3DP04234 171 aa10.87□□□□□ -0.67
VPS28-215ENST00000531924 PPP5CP53041 499 aa10.87□□□□□ -0.67
VPS28-215ENST00000531924 ZNF124Q15973 351 aa10.87□□□□□ -0.67
VPS28-215ENST00000531924 SCGB2B2Q4G0G5 96 aa10.87□□□□□ -0.67
VPS28-215ENST00000531924 NARS2Q96I59 477 aaKnown RBP10.87□□□□□ -0.67
VPS28-215ENST00000531924 EXTL2Q9UBQ6 330 aa10.87□□□□□ -0.67
VPS28-215ENST00000531924 KLK11Q9UBX7 282 aa10.87□□□□□ -0.67
VPS28-215ENST00000531924 PUS1Q9Y606 427 aaKnown RBP eCLIP10.87□□□□□ -0.67
VPS28-215ENST00000531924 IGKV1-5P01602 117 aa10.86□□□□□ -0.67
VPS28-215ENST00000531924 ZNF182P17025 639 aaPredicted RBP10.86□□□□□ -0.67
VPS28-215ENST00000531924 NPPCP23582 126 aa10.86□□□□□ -0.67
VPS28-215ENST00000531924 ETV6P41212 452 aa10.86□□□□□ -0.67
VPS28-215ENST00000531924 SP6Q3SY56 376 aa10.86□□□□□ -0.67
VPS28-215ENST00000531924 OR52I2Q8NH67 350 aa10.86□□□□□ -0.67
VPS28-215ENST00000531924 PHLDA1Q8WV24 401 aaPredicted RBP10.86□□□□□ -0.67
VPS28-215ENST00000531924 ST8SIA2Q92186 375 aa10.86□□□□□ -0.67
VPS28-215ENST00000531924 TP53RKQ96S44 253 aa10.86□□□□□ -0.67
VPS28-215ENST00000531924 RABAC1Q9UI14 185 aa10.86□□□□□ -0.67
VPS28-215ENST00000531924 A0A0B4J293 547 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 A0A1W2PS18 150 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 DFFBO76075 338 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 CA1P00915 261 aaPredicted RBP10.85□□□□□ -0.67
VPS28-215ENST00000531924 IFNA4P05014 189 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 OPRK1P41145 380 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 FAM90A2PQ658T7 463 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 LHFPL1Q86WI0 220 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 OR11H2Q8NH07 326 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 TERB2Q8NHR7 220 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 TMEM230Q96A57 120 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 METTL26Q96S19 204 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 MFFQ9GZY8 342 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 MS4A6AQ9H2W1 248 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 MTFP1Q9UDX5 166 aa10.85□□□□□ -0.67
VPS28-215ENST00000531924 INS-IGF2F8WCM5 200 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 B3GALNT1O75752 331 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 RAB3DO95716 219 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms