RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 MEIS3P1A6NDR6 274 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 OR4C45A6NMZ5 311 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 KNCNA6PVL3 124 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 A8MT66 165 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 KLF7O75840 302 aaPredicted RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 GABARAPO95166 117 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 LY6G6DO95868 133 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 NCR2O95944 276 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 SMIM10L2AP0DMW4 78 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 SMIM10L2BP0DMW5 78 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 ADCYAP1P18509 176 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 PSMB8P28062 276 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 PPP1CCP36873 323 aaKnown RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 MYCNOSP40205 109 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 OPRK1P41145 380 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 GUCA1AP43080 201 aaPredicted RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 NOVP48745 357 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 FOXA3P55318 350 aaPredicted RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 YPEL3P61236 119 aaPredicted RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 PRR3P79522 188 aaKnown RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 KLRD1Q13241 179 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 EIF3IQ13347 325 aaKnown RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 FKBP1CQ5VVH2 108 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 SBSNQ6UWP8 590 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 HEPN1Q6WQI6 88 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 SAXO1Q8IYX7 474 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 C11orf72Q8NBR9 251 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 OR11H7Q8NGC8 314 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 LINC01006Q8NI28 216 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 C15orf40Q8WUR7 153 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 RNF185Q96GF1 192 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 ZC2HC1AQ96GY0 325 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 IMMP1LQ96LU5 166 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 IGF2BP2-AS1Q96M15 143 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 AP1S3Q96PC3 154 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 PKMYT1Q99640 499 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 HDHD3Q9BSH5 251 aaPredicted RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 SNRNP25Q9BV90 132 aaKnown RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 KRTAP4-3Q9BYR4 195 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 SLIRPQ9GZT3 109 aaKnown RBP2.29□□□□□ -2.04
CD44-229ENST00000528672 TMEM191AQ9H0A3 160 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 BANF2Q9H503 90 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 RERGLQ9H628 205 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 LAMTOR3Q9UHA4 124 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 MPC1Q9Y5U8 109 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 SMAD5-AS1Q9Y6J3 95 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 DOCK3Q8IZD9 2030 aa2.29□□□□□ -2.04
CD44-229ENST00000528672 SIGLEC1Q9BZZ2 1709 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 ADAMTSL3P82987 1691 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 ZC3H13Q5T200 1668 aaKnown RBP2.28□□□□□ -2.04
CD44-229ENST00000528672 NHSL1Q5SYE7 1610 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 TOPBP1Q92547 1522 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 A2ML1A8K2U0 1454 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 PTPRKQ15262 1439 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 COL1A2P08123 1366 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 TRBV19A0A075B6N1 114 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 TRGV10A0A0A0MS01 117 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 FAM236AA0A1B0GUQ0 79 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 FAM236BA0A1B0GV22 79 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 TRDV1A0A1B0GX56 115 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 TCRBV3S1A0A5B6 114 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 ODAMA1E959 279 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 C5orf49A4QMS7 147 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 IZUMO1RA6ND01 250 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 BBIP1A8MTZ0 92 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 RER1O15258 196 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 CD5LO43866 347 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BKO60814 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 PDCD6O75340 191 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 CA2P00918 260 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HRASP01112 189 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 KRASP01116 189 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 PTHP01270 115 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 IGLV2-23P01705 113 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HLA-DRB1P01911 266 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HLA-DPB1P04440 258 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BJP06899 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 IFITM1P13164 125 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BOP23527 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 NFYBP25208 207 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 CRYBB3P26998 211 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BBP33778 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 ZNF93P35789 620 aaPredicted RBP2.28□□□□□ -2.04
CD44-229ENST00000528672 CXCL5P42830 114 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 NUDT2P50583 147 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 SLC18A1P54219 525 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BDP58876 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 DAD1P61803 113 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST1H2BCP62807 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 CACNG7P62955 275 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HERVK_113P63121 156 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 CRADDP78560 199 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HLA-DRB3P79483 266 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 NDPQ00604 133 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 DIAPH2-AS1Q14236 149 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HMGN3Q15651 99 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST2H2BEQ16778 126 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 SP6Q3SY56 376 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 TTC32Q5I0X7 151 aa2.28□□□□□ -2.04
CD44-229ENST00000528672 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms