RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 S100A16Q96FQ6 103 aaKnown RBP17.18■□□□□ 0.34
CPSF1-202ENST00000527827 SEC22AQ96IW7 307 aa17.18■□□□□ 0.34
CPSF1-202ENST00000527827 MS4A6AQ9H2W1 248 aa17.18■□□□□ 0.34
CPSF1-202ENST00000527827 PCLOQ9Y6V0 5065 aa17.18■□□□□ 0.34
CPSF1-202ENST00000527827 AGRNO00468 2067 aa17.17■□□□□ 0.34
CPSF1-202ENST00000527827 GNG7O60262 68 aa17.17■□□□□ 0.34
CPSF1-202ENST00000527827 TAS2R46P59540 309 aa17.17■□□□□ 0.34
CPSF1-202ENST00000527827 DEFB131AP59861 70 aa17.17■□□□□ 0.34
CPSF1-202ENST00000527827 PHLDA2Q53GA4 152 aa17.17■□□□□ 0.34
CPSF1-202ENST00000527827 LEMD1Q68G75 181 aa17.17■□□□□ 0.34
CPSF1-202ENST00000527827 FAM24BQ8N5W8 94 aa17.17■□□□□ 0.34
CPSF1-202ENST00000527827 OR6F1Q8NGZ6 308 aa17.17■□□□□ 0.34
CPSF1-202ENST00000527827 FAM212BQ9NTI7 297 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-202ENST00000527827 TMEM127O75204 238 aa17.16■□□□□ 0.34
CPSF1-202ENST00000527827 IGKV1-39P01597 117 aa17.16■□□□□ 0.34
CPSF1-202ENST00000527827 IGKV1D-39P04432 117 aa17.16■□□□□ 0.34
CPSF1-202ENST00000527827 CD5P06127 495 aa17.16■□□□□ 0.34
CPSF1-202ENST00000527827 TAS2R20P59543 309 aa17.16■□□□□ 0.34
CPSF1-202ENST00000527827 PRCDQ00LT1 54 aa17.16■□□□□ 0.34
CPSF1-202ENST00000527827 LYSMD2Q8IV50 215 aa17.16■□□□□ 0.34
CPSF1-202ENST00000527827 Q8NAQ8 132 aa17.16■□□□□ 0.34
CPSF1-202ENST00000527827 PINX1Q96BK5 328 aaKnown RBP17.16■□□□□ 0.34
CPSF1-202ENST00000527827 GINS3Q9BRX5 216 aa17.16■□□□□ 0.34
CPSF1-202ENST00000527827 YTHDF1Q9BYJ9 559 aaKnown RBP17.16■□□□□ 0.34
CPSF1-202ENST00000527827 ST8SIA3O43173 380 aa17.15■□□□□ 0.34
CPSF1-202ENST00000527827 DFFBO76075 338 aa17.15■□□□□ 0.34
CPSF1-202ENST00000527827 EIF4EP06730 217 aaKnown RBP17.15■□□□□ 0.34
CPSF1-202ENST00000527827 UBE2NLQ5JXB2 153 aa17.15■□□□□ 0.34
CPSF1-202ENST00000527827 OR4A16Q8NH70 328 aa17.15■□□□□ 0.34
CPSF1-202ENST00000527827 ZFAND3Q9H8U3 227 aa17.15■□□□□ 0.34
CPSF1-202ENST00000527827 TRAV2A0A0B4J234 112 aa17.14■□□□□ 0.33
CPSF1-202ENST00000527827 IGHV3-66A0A0C4DH42 116 aa17.14■□□□□ 0.33
CPSF1-202ENST00000527827 IGLL5B9A064 214 aa17.14■□□□□ 0.33
CPSF1-202ENST00000527827 DNASE2O00115 360 aaPredicted RBP17.14■□□□□ 0.33
CPSF1-202ENST00000527827 GIG44P09565 113 aaPredicted RBP17.14■□□□□ 0.33
CPSF1-202ENST00000527827 HRH1P35367 487 aa17.14■□□□□ 0.33
CPSF1-202ENST00000527827 TGFBR1P36897 503 aa17.14■□□□□ 0.33
CPSF1-202ENST00000527827 TMEM69Q5SWH9 247 aa17.14■□□□□ 0.33
CPSF1-202ENST00000527827 H2BFWTQ7Z2G1 175 aa17.14■□□□□ 0.33
CPSF1-202ENST00000527827 TBC1D26Q86UD7 250 aa17.14■□□□□ 0.33
CPSF1-202ENST00000527827 HSPE1P61604 102 aaKnown RBP17.13■□□□□ 0.33
CPSF1-202ENST00000527827 HRH4Q9H3N8 390 aa17.13■□□□□ 0.33
CPSF1-202ENST00000527827 PUS1Q9Y606 427 aaKnown RBP eCLIP17.13■□□□□ 0.33
CPSF1-202ENST00000527827 C11orf94C9JXX5 98 aa17.12■□□□□ 0.33
CPSF1-202ENST00000527827 RBMY1A1P0DJD3 496 aaKnown RBP17.12■□□□□ 0.33
CPSF1-202ENST00000527827 RBMY1CP0DJD4 496 aa17.12■□□□□ 0.33
CPSF1-202ENST00000527827 HLA-DMAP28067 261 aa17.12■□□□□ 0.33
CPSF1-202ENST00000527827 RBMY1FQ15415 496 aaKnown RBP17.12■□□□□ 0.33
CPSF1-202ENST00000527827 ZNF600Q6ZNG1 722 aa17.12■□□□□ 0.33
CPSF1-202ENST00000527827 DUSP18Q8NEJ0 188 aa17.12■□□□□ 0.33
CPSF1-202ENST00000527827 MRGPRFQ96AM1 343 aa17.12■□□□□ 0.33
CPSF1-202ENST00000527827 PRSS3P35030 304 aa17.11■□□□□ 0.33
CPSF1-202ENST00000527827 NPBWR1P48145 328 aa17.11■□□□□ 0.33
CPSF1-202ENST00000527827 RPL11P62913 178 aaKnown RBP17.11■□□□□ 0.33
CPSF1-202ENST00000527827 ERHP84090 104 aaKnown RBP17.11■□□□□ 0.33
CPSF1-202ENST00000527827 NEDD8Q15843 81 aa17.11■□□□□ 0.33
CPSF1-202ENST00000527827 CROCCP3Q8IVE0 287 aa17.11■□□□□ 0.33
CPSF1-202ENST00000527827 SAMD12Q8N8I0 201 aa17.11■□□□□ 0.33
CPSF1-202ENST00000527827 IGHV4-28A0A0C4DH34 117 aa17.1■□□□□ 0.33
CPSF1-202ENST00000527827 A0A1B0GU03 582 aa17.1■□□□□ 0.33
CPSF1-202ENST00000527827 S100GP29377 79 aa17.1■□□□□ 0.33
CPSF1-202ENST00000527827 IZUMO4Q1ZYL8 232 aa17.1■□□□□ 0.33
CPSF1-202ENST00000527827 SPINK9Q5DT21 86 aa17.1■□□□□ 0.33
CPSF1-202ENST00000527827 LPCAT3Q6P1A2 487 aa17.1■□□□□ 0.33
CPSF1-202ENST00000527827 TRPT1Q86TN4 253 aaKnown RBP17.1■□□□□ 0.33
CPSF1-202ENST00000527827 STHQ8IWL8 128 aa17.1■□□□□ 0.33
CPSF1-202ENST00000527827 RABAC1Q9UI14 185 aa17.1■□□□□ 0.33
CPSF1-202ENST00000527827 TMEM50AO95807 157 aa17.09■□□□□ 0.33
CPSF1-202ENST00000527827 HLA-DMBP28068 263 aa17.09■□□□□ 0.33
CPSF1-202ENST00000527827 RPS19P39019 145 aaKnown RBP17.09■□□□□ 0.33
CPSF1-202ENST00000527827 GPX8Q8TED1 209 aa17.09■□□□□ 0.33
CPSF1-202ENST00000527827 K7EQG2 157 aa17.08■□□□□ 0.32
CPSF1-202ENST00000527827 TSPAN5P62079 268 aa17.08■□□□□ 0.32
CPSF1-202ENST00000527827 PVRIGQ6DKI7 326 aa17.08■□□□□ 0.32
CPSF1-202ENST00000527827 Q9H521 79 aa17.08■□□□□ 0.32
CPSF1-202ENST00000527827 MIFP14174 115 aa17.07■□□□□ 0.32
CPSF1-202ENST00000527827 C4BPBP20851 252 aa17.07■□□□□ 0.32
CPSF1-202ENST00000527827 UCP3P55916 312 aa17.07■□□□□ 0.32
CPSF1-202ENST00000527827 Q6ZTC4 211 aa17.07■□□□□ 0.32
CPSF1-202ENST00000527827 TMEM231Q9H6L2 316 aa17.07■□□□□ 0.32
CPSF1-202ENST00000527827 MRPL36Q9P0J6 103 aaKnown RBP17.07■□□□□ 0.32
CPSF1-202ENST00000527827 X6R8D5 127 aa17.07■□□□□ 0.32
CPSF1-202ENST00000527827 ELOA3CA0A087WX78 387 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-202ENST00000527827 ZNF705EA8MWA4 302 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-202ENST00000527827 INS-IGF2F8WCM5 200 aa17.06■□□□□ 0.32
CPSF1-202ENST00000527827 NPPCP23582 126 aa17.06■□□□□ 0.32
CPSF1-202ENST00000527827 TMEM41BQ5BJD5 291 aa17.06■□□□□ 0.32
CPSF1-202ENST00000527827 FAT2Q9NYQ8 4349 aa17.06■□□□□ 0.32
CPSF1-202ENST00000527827 IGHV4-4A0A075B6R2 117 aa17.05■□□□□ 0.32
CPSF1-202ENST00000527827 TRAV10A0A0B4J240 114 aa17.05■□□□□ 0.32
CPSF1-202ENST00000527827 KNCNA6PVL3 124 aa17.05■□□□□ 0.32
CPSF1-202ENST00000527827 IGKV1-5P01602 117 aa17.05■□□□□ 0.32
CPSF1-202ENST00000527827 P0C879 139 aa17.05■□□□□ 0.32
CPSF1-202ENST00000527827 SPP1P10451 314 aa17.05■□□□□ 0.32
CPSF1-202ENST00000527827 SNCAP37840 140 aa17.05■□□□□ 0.32
CPSF1-202ENST00000527827 MORN3Q6PF18 240 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-202ENST00000527827 STXBP6Q8NFX7 210 aa17.05■□□□□ 0.32
CPSF1-202ENST00000527827 GRAMD2BQ96HH9 432 aa17.05■□□□□ 0.32
CPSF1-202ENST00000527827 A0A0B4J293 547 aa17.04■□□□□ 0.32
CPSF1-202ENST00000527827 A0A1W2PS18 150 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms