RNA–Protein interactions for RNA: ENST00000527680.1

TRAPPC4-208, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 569 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-208ENST00000527680 IGKV1-39P01597 117 aa16.52■□□□□ 0.24
TRAPPC4-208ENST00000527680 IGKV1D-39P04432 117 aa16.52■□□□□ 0.24
TRAPPC4-208ENST00000527680 FCGR2BP31994 310 aaPredicted RBP16.52■□□□□ 0.24
TRAPPC4-208ENST00000527680 SNCAP37840 140 aa16.52■□□□□ 0.24
TRAPPC4-208ENST00000527680 SPINK9Q5DT21 86 aa16.52■□□□□ 0.24
TRAPPC4-208ENST00000527680 OR10C1Q96KK4 312 aa16.52■□□□□ 0.24
TRAPPC4-208ENST00000527680 BIRC6Q9NR09 4857 aa16.51■□□□□ 0.23
TRAPPC4-208ENST00000527680 M0QYG6 137 aa16.51■□□□□ 0.23
TRAPPC4-208ENST00000527680 VBP1P61758 197 aa16.51■□□□□ 0.23
TRAPPC4-208ENST00000527680 NCS1P62166 190 aa16.51■□□□□ 0.23
TRAPPC4-208ENST00000527680 DUSP18Q8NEJ0 188 aa16.51■□□□□ 0.23
TRAPPC4-208ENST00000527680 GINS3Q9BRX5 216 aa16.51■□□□□ 0.23
TRAPPC4-208ENST00000527680 PLECQ15149 4684 aaKnown RBP16.51■□□□□ 0.23
TRAPPC4-208ENST00000527680 ALMS1Q8TCU4 4167 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 FAM25AB3EWG3 89 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 FAM25CB3EWG5 89 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 FAM25GB3EWG6 89 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 DNASE2O00115 360 aaPredicted RBP16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 HPGDSO60760 199 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 TNFAIP8O95379 198 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 ATF4P18848 351 aaPredicted RBP16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 ELK1P19419 428 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 NPBWR1P48145 328 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 RPL11P62913 178 aaKnown RBP16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 IZUMO4Q1ZYL8 232 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 RNASE12Q5GAN4 147 aaKnown RBP16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 TCF24Q7RTU0 167 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 ZNF114Q8NC26 417 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 RARRES2Q99969 163 aa16.5■□□□□ 0.23
TRAPPC4-208ENST00000527680 IFNA17P01571 189 aa16.49■□□□□ 0.23
TRAPPC4-208ENST00000527680 PI3P19957 117 aa16.49■□□□□ 0.23
TRAPPC4-208ENST00000527680 SLC35G3Q8N808 338 aa16.49■□□□□ 0.23
TRAPPC4-208ENST00000527680 FUNDC2Q9BWH2 189 aa16.49■□□□□ 0.23
TRAPPC4-208ENST00000527680 ST8SIA3O43173 380 aa16.48■□□□□ 0.23
TRAPPC4-208ENST00000527680 CD5P06127 495 aa16.48■□□□□ 0.23
TRAPPC4-208ENST00000527680 RORCP51449 518 aa16.48■□□□□ 0.23
TRAPPC4-208ENST00000527680 AKR1C2P52895 323 aa16.48■□□□□ 0.23
TRAPPC4-208ENST00000527680 MZT2AQ6P582 158 aa16.48■□□□□ 0.23
TRAPPC4-208ENST00000527680 TOMM20LQ6UXN7 152 aa16.48■□□□□ 0.23
TRAPPC4-208ENST00000527680 PHLDA1Q8WV24 401 aaPredicted RBP16.48■□□□□ 0.23
TRAPPC4-208ENST00000527680 ZNF414Q96IQ9 312 aa16.48■□□□□ 0.23
TRAPPC4-208ENST00000527680 PDCD10Q9BUL8 212 aa16.48■□□□□ 0.23
TRAPPC4-208ENST00000527680 IGHV3-66A0A0C4DH42 116 aa16.47■□□□□ 0.23
TRAPPC4-208ENST00000527680 ATG12O94817 140 aa16.47■□□□□ 0.23
TRAPPC4-208ENST00000527680 SUB1P53999 127 aaKnown RBP eCLIP16.47■□□□□ 0.232e-9■■■■■ 55.6
TRAPPC4-208ENST00000527680 PIGPP57054 158 aa16.47■□□□□ 0.23
TRAPPC4-208ENST00000527680 RNASE10Q5GAN6 216 aaKnown RBP16.47■□□□□ 0.23
TRAPPC4-208ENST00000527680 FAM90A2PQ658T7 463 aa16.47■□□□□ 0.23
TRAPPC4-208ENST00000527680 GATAD1Q8WUU5 269 aa16.47■□□□□ 0.23
TRAPPC4-208ENST00000527680 ST8SIA2Q92186 375 aa16.47■□□□□ 0.23
TRAPPC4-208ENST00000527680 ZNF600Q6ZNG1 722 aa16.46■□□□□ 0.23
TRAPPC4-208ENST00000527680 OR11H2Q8NH07 326 aa16.46■□□□□ 0.23
TRAPPC4-208ENST00000527680 ZNF486Q96H40 463 aaPredicted RBP16.46■□□□□ 0.23
TRAPPC4-208ENST00000527680 ENY2Q9NPA8 101 aa16.46■□□□□ 0.23
TRAPPC4-208ENST00000527680 KLK11Q9UBX7 282 aa16.46■□□□□ 0.23
TRAPPC4-208ENST00000527680 PUS1Q9Y606 427 aaKnown RBP eCLIP16.46■□□□□ 0.23
TRAPPC4-208ENST00000527680 DFFBO76075 338 aa16.45■□□□□ 0.22
TRAPPC4-208ENST00000527680 APOHP02749 345 aaPredicted RBP16.45■□□□□ 0.22
TRAPPC4-208ENST00000527680 ETV6P41212 452 aa16.45■□□□□ 0.22
TRAPPC4-208ENST00000527680 RND3P61587 244 aa16.45■□□□□ 0.22
TRAPPC4-208ENST00000527680 TRIM16LQ309B1 348 aa16.45■□□□□ 0.22
TRAPPC4-208ENST00000527680 TP53RKQ96S44 253 aa16.45■□□□□ 0.22
TRAPPC4-208ENST00000527680 MS4A6AQ9H2W1 248 aa16.45■□□□□ 0.22
TRAPPC4-208ENST00000527680 A0A0B4J293 547 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 C3orf85A0A1B0GTC6 90 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 TMEM50AO95807 157 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 IGKV1-5P01602 117 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 DEFB131AP59861 70 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 LEMD1Q68G75 181 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 LILRB2Q8N423 598 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 RNASE11Q8TAA1 199 aaKnown RBP16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 C11orf45Q8TAV5 145 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 COPZ2Q9P299 210 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 FBXL17Q9UF56 701 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 RABAC1Q9UI14 185 aa16.44■□□□□ 0.22
TRAPPC4-208ENST00000527680 CA1P00915 261 aaPredicted RBP16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 CD3DP04234 171 aa16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 IFNA4P05014 189 aa16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 NPPCP23582 126 aa16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 HOXA1P49639 335 aaPredicted RBP16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 SP6Q3SY56 376 aa16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 OR52I2Q8NH67 350 aa16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 RRNAD1Q96FB5 475 aaKnown RBP16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 TMEM231Q9H6L2 316 aa16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 VSIRQ9H7M9 311 aa16.43■□□□□ 0.22
TRAPPC4-208ENST00000527680 CORTO00230 105 aa16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 PPP5CP53041 499 aa16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 NANOS2P60321 138 aaKnown RBP16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 ARRDC1Q8N5I2 433 aa16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 CCDC71LQ8N9Z2 235 aa16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 ZFAND1Q8TCF1 268 aa16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 AP3S1Q92572 193 aa16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 TMEM230Q96A57 120 aa16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 MFFQ9GZY8 342 aa16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 EXTL2Q9UBQ6 330 aa16.42■□□□□ 0.22
TRAPPC4-208ENST00000527680 A0A1W2PS18 150 aa16.41■□□□□ 0.22
TRAPPC4-208ENST00000527680 OPRK1P41145 380 aa16.41■□□□□ 0.22
TRAPPC4-208ENST00000527680 TMEM187Q14656 261 aa16.41■□□□□ 0.22
TRAPPC4-208ENST00000527680 RBMS2Q15434 407 aaKnown RBP16.41■□□□□ 0.22
TRAPPC4-208ENST00000527680 SCGB2B2Q4G0G5 96 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms