RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 ASIPP42127 132 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 UCNP55089 124 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 RPS15AP62244 130 aaKnown RBP4.79□□□□□ -1.64
CD44-225ENST00000527326 PSG5Q15238 335 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 GUSBP1Q15486 140 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 SGCBQ16585 318 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 VWC2Q2TAL6 325 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 TMEM211Q6ICI0 200 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 C6orf201Q7Z4U5 140 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 HSD11B1LQ7Z5J1 315 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 TMEFF1Q8IYR6 380 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 TDHQ8IZJ6 230 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 SPEM1Q8N4L4 309 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 DEFB123Q8N688 67 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 SCAMP4Q969E2 229 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 RPEQ96AT9 228 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 VSTM2LQ96N03 204 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 TRIB1Q96RU8 372 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 IFI27L2Q9H2X8 130 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 PRO3102Q9H379 93 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 C6orf106Q9H6K1 298 aaPredicted RBP4.79□□□□□ -1.64
CD44-225ENST00000527326 MDFICQ9P1T7 246 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 EYSQ5T1H1 3165 aa4.79□□□□□ -1.64
CD44-225ENST00000527326 LOC101059948A0A1B0GTJ6 334 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 A0A1W2PPV9 198 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 PRSS38A1L453 326 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 C4orf51C9J302 202 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 PDCD6O75340 191 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 MPDU1O75352 247 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 SNCGO76070 127 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 FRMD6-AS1P0C7T7 363 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 ZNF688P0C7X2 276 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 CTLA4P16410 223 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 GCSHP23434 173 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 CXCL12P48061 93 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 ERVK11-1P61568 191 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 RPS18P62269 152 aaKnown RBP4.78□□□□□ -1.64
CD44-225ENST00000527326 MRPS6P82932 125 aaKnown RBP4.78□□□□□ -1.64
CD44-225ENST00000527326 PRDX1Q06830 199 aaKnown RBP4.78□□□□□ -1.64
CD44-225ENST00000527326 MGAT2Q10469 447 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 KISS1Q15726 138 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 TAL2Q16559 108 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 RTL8BQ17RB0 113 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 CR1LQ2VPA4 569 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 ZNF718Q3SXZ3 478 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 POM121L1PQ3SYA9 428 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 MEIG1Q5JSS6 88 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 FNDC7Q5VTL7 733 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 C22orf39Q6P5X5 142 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 FAM231DQ6ZW35 169 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 SSX8Q7RTT4 187 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 YAF2Q8IY57 180 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 SMRP1Q8NCR6 262 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 PIFOQ8TCI5 191 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 PHLDA1Q8WV24 401 aaPredicted RBP4.78□□□□□ -1.64
CD44-225ENST00000527326 SPACA5Q96QH8 159 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 HDHD3Q9BSH5 251 aaPredicted RBP4.78□□□□□ -1.64
CD44-225ENST00000527326 PIMREGQ9BSJ6 248 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 SSBP3Q9BWW4 388 aaPredicted RBP4.78□□□□□ -1.64
CD44-225ENST00000527326 C1QTNF5Q9BXJ0 243 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 NPCDR1Q9BY65 106 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 KRTAP9-3Q9BYQ3 159 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 AKIRIN1Q9H9L7 192 aaPredicted RBP4.78□□□□□ -1.64
CD44-225ENST00000527326 KLRF1Q9NZS2 232 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 C19orf25Q9UFG5 118 aaPredicted RBP4.78□□□□□ -1.64
CD44-225ENST00000527326 MPC1Q9Y5U8 109 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 FANCMQ8IYD8 2048 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 EML5Q05BV3 1969 aa4.78□□□□□ -1.64
CD44-225ENST00000527326 OBSL1O75147 1896 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 TNRC6AQ8NDV7 1962 aaKnown RBP4.77□□□□□ -1.65
CD44-225ENST00000527326 TRAV5A0A0B4J249 113 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 ZNF816-ZNF321PA0A0X1KG74 233 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 A0A1W2PPI3 338 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 FAM90A18PA6NE21 464 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 FAM90A16PA6NEW6 464 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 FAM90A8PA6NJQ4 464 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 FAM90A9PA6NNJ1 464 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 TNFSF11O14788 317 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 DNPH1O43598 174 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 NXPH3O95157 252 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 CRYGBP07316 175 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 FAM106CPP0CH98 169 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 IAPPP10997 89 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 HLA-DRB4P13762 266 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 CD38P28907 300 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 MPV17P39210 176 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 KIR2DS2P43631 304 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 INSL3P51460 131 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 CLRN1P58418 232 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 RPS28P62857 69 aaKnown RBP4.77□□□□□ -1.65
CD44-225ENST00000527326 RPL31P62899 125 aaKnown RBP4.77□□□□□ -1.65
CD44-225ENST00000527326 DIAPH2-AS1Q14236 149 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 FAM110CQ1W6H9 321 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 LGALS9BQ3B8N2 356 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 FAM106AQ4KMX7 169 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 SPANXN5Q5MJ07 72 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 IBA57Q5T440 356 aaKnown RBP4.77□□□□□ -1.65
CD44-225ENST00000527326 LYRM7Q5U5X0 104 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 LGALS9CQ6DKI2 356 aa4.77□□□□□ -1.65
CD44-225ENST00000527326 PQLC2Q6ZP29 291 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms