RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 MRGPRG-AS1Q2M3A8 158 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 VMA21Q3ZAQ7 101 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 KHDC3LQ587J8 217 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 C17orf50Q8WW18 174 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 CREBBPQ92793 2442 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 MGST2Q99735 147 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 LSM4Q9Y4Z0 139 aaKnown RBP15.09■□□□□ 0.01
VPS28-207ENST00000526977 LOC102723971A0A1B0GUV8 181 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 CGB1A6NKQ9 187 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 HSPB1P04792 205 aaKnown RBP15.09■□□□□ 0.01
VPS28-207ENST00000526977 FBP1P09467 338 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 IGHV4-38-2P0DP08 117 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 C2orf83Q53S99 150 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 DYNAPQ8N1N2 210 aa15.09■□□□□ 0.01
VPS28-207ENST00000526977 ACTR3CQ9C0K3 210 aaPredicted RBP15.09■□□□□ 0.01
VPS28-207ENST00000526977 CTXND1A0A1B0GTU2 59 aa15.08■□□□□ 0
VPS28-207ENST00000526977 INS-IGF2F8WCM5 200 aa15.08■□□□□ 0
VPS28-207ENST00000526977 VENTXO95231 258 aa15.08■□□□□ 0
VPS28-207ENST00000526977 RNASE2P10153 161 aaKnown RBP15.08■□□□□ 0
VPS28-207ENST00000526977 BRS3P32247 399 aa15.08■□□□□ 0
VPS28-207ENST00000526977 OPRK1P41145 380 aa15.08■□□□□ 0
VPS28-207ENST00000526977 ACOT6Q3I5F7 207 aaPredicted RBP15.08■□□□□ 0
VPS28-207ENST00000526977 SOHLH1Q5JUK2 328 aa15.08■□□□□ 0
VPS28-207ENST00000526977 SLC25A22Q9H936 323 aa15.08■□□□□ 0
VPS28-207ENST00000526977 TPSG1Q9NRR2 321 aa15.08■□□□□ 0
VPS28-207ENST00000526977 IGHV3OR16-10A0A075B7F0 116 aa15.07■□□□□ 0
VPS28-207ENST00000526977 HMGB3O15347 200 aaKnown RBP15.07■□□□□ 0
VPS28-207ENST00000526977 CYB5BO43169 146 aa15.07■□□□□ 0
VPS28-207ENST00000526977 ATF4P18848 351 aaPredicted RBP15.07■□□□□ 0
VPS28-207ENST00000526977 PMS2P11Q13670 270 aa15.07■□□□□ 0
VPS28-207ENST00000526977 KLF17Q5JT82 389 aaPredicted RBP15.07■□□□□ 0
VPS28-207ENST00000526977 FAM122CQ6P4D5 195 aa15.07■□□□□ 0
VPS28-207ENST00000526977 RAB24Q969Q5 203 aa15.07■□□□□ 0
VPS28-207ENST00000526977 ZFP92A6NM28 416 aa15.07■□□□□ 0
VPS28-207ENST00000526977 FNDC10F2Z333 226 aa15.07■□□□□ 0
VPS28-207ENST00000526977 SMAD7O15105 426 aaKnown RBP15.07■□□□□ 0
VPS28-207ENST00000526977 CRYGBP07316 175 aa15.07■□□□□ 0
VPS28-207ENST00000526977 ERHP84090 104 aaKnown RBP15.07■□□□□ 0
VPS28-207ENST00000526977 C10orf55Q5SWW7 151 aa15.07■□□□□ 0
VPS28-207ENST00000526977 RUSC1-AS1Q66K80 236 aa15.07■□□□□ 0
VPS28-207ENST00000526977 BRD3OSQ6XYD6 125 aa15.07■□□□□ 0
VPS28-207ENST00000526977 TEX45Q8NA69 505 aa15.07■□□□□ 0
VPS28-207ENST00000526977 GGTLC1Q9BX51 225 aa15.07■□□□□ 0
VPS28-207ENST00000526977 SOX15O60248 233 aa15.06■□□□□ 0
VPS28-207ENST00000526977 YIF1AO95070 293 aa15.06■□□□□ 0
VPS28-207ENST00000526977 MOSP00540 346 aa15.06■□□□□ 0
VPS28-207ENST00000526977 BCL2P10415 239 aa15.06■□□□□ 0
VPS28-207ENST00000526977 CNTFRP26992 372 aa15.06■□□□□ 0
VPS28-207ENST00000526977 GCSAMLQ5JQS6 135 aa15.06■□□□□ 0
VPS28-207ENST00000526977 TEPPQ6URK8 271 aa15.06■□□□□ 0
VPS28-207ENST00000526977 OR2T10Q8NGZ9 312 aa15.06■□□□□ 0
VPS28-207ENST00000526977 MEGF9Q9H1U4 602 aa15.06■□□□□ 0
VPS28-207ENST00000526977 A0A1W2PN81 502 aa15.05■□□□□ 0
VPS28-207ENST00000526977 FAM106CPP0CH98 169 aa15.05■□□□□ 0
VPS28-207ENST00000526977 DEFA4P12838 97 aa15.05■□□□□ 0
VPS28-207ENST00000526977 CHRNA7P36544 502 aa15.05■□□□□ 0
VPS28-207ENST00000526977 WT1-ASQ06250 92 aa15.05■□□□□ 0
VPS28-207ENST00000526977 EBI3Q14213 229 aa15.05■□□□□ 0
VPS28-207ENST00000526977 PSG5Q15238 335 aa15.05■□□□□ 0
VPS28-207ENST00000526977 MIC13Q5XKP0 118 aa15.05■□□□□ 0
VPS28-207ENST00000526977 NANPQ8TBE9 248 aa15.05■□□□□ 0
VPS28-207ENST00000526977 TMPRSS5Q9H3S3 457 aa15.05■□□□□ 0
VPS28-207ENST00000526977 PXMP4Q9Y6I8 212 aa15.05■□□□□ 0
VPS28-207ENST00000526977 ITPR3Q14573 2671 aa15.05■□□□□ -0
VPS28-207ENST00000526977 SVEP1Q4LDE5 3571 aa15.05■□□□□ -0
VPS28-207ENST00000526977 SEC14L6B5MCN3 397 aa15.05■□□□□ -0
VPS28-207ENST00000526977 PAX6P26367 422 aa15.05■□□□□ -0
VPS28-207ENST00000526977 MLANAQ16655 118 aa15.05■□□□□ -0
VPS28-207ENST00000526977 CYB561D1Q8N8Q1 229 aa15.05■□□□□ -0
VPS28-207ENST00000526977 SNRNP70P08621 437 aaKnown RBP15.04■□□□□ -0
VPS28-207ENST00000526977 HES1Q14469 280 aa15.04■□□□□ -0
VPS28-207ENST00000526977 PRSS8Q16651 343 aa15.04■□□□□ -0
VPS28-207ENST00000526977 AWAT1Q58HT5 328 aa15.04■□□□□ -0
VPS28-207ENST00000526977 TEX29Q8N6K0 151 aa15.04■□□□□ -0
VPS28-207ENST00000526977 EAF1Q96JC9 268 aaPredicted RBP15.04■□□□□ -0
VPS28-207ENST00000526977 CEBPGP53567 150 aa15.04■□□□□ -0
VPS28-207ENST00000526977 SSMEM1Q8WWF3 244 aa15.04■□□□□ -0
VPS28-207ENST00000526977 VAX2Q9UIW0 290 aa15.04■□□□□ -0
VPS28-207ENST00000526977 SIGLEC9Q9Y336 463 aa15.04■□□□□ -0
VPS28-207ENST00000526977 A0A0U1RQK1 487 aa15.03■□□□□ -0
VPS28-207ENST00000526977 C7orf77A4D0Y5 90 aa15.03■□□□□ -0
VPS28-207ENST00000526977 AKR1C3P42330 323 aa15.03■□□□□ -0
VPS28-207ENST00000526977 CDC34P49427 236 aaPredicted RBP15.03■□□□□ -0
VPS28-207ENST00000526977 RAB31Q13636 194 aa15.03■□□□□ -0
VPS28-207ENST00000526977 GAMTQ14353 236 aa15.03■□□□□ -0
VPS28-207ENST00000526977 AKIRIN2Q53H80 203 aa15.03■□□□□ -0
VPS28-207ENST00000526977 RBMS3Q6XE24 437 aaKnown RBP15.03■□□□□ -0
VPS28-207ENST00000526977 PUS1Q9Y606 427 aaKnown RBP eCLIP15.03■□□□□ -0
VPS28-207ENST00000526977 ABCA1O95477 2261 aa15.03■□□□□ -0
VPS28-207ENST00000526977 CD24P25063 80 aa15.02■□□□□ -0
VPS28-207ENST00000526977 TMEM144Q7Z5S9 345 aa15.02■□□□□ -0
VPS28-207ENST00000526977 MMD2Q8IY49 270 aa15.02■□□□□ -0
VPS28-207ENST00000526977 NPBQ8NG41 125 aa15.02■□□□□ -0
VPS28-207ENST00000526977 C20orf24Q9BUV8 137 aa15.02■□□□□ -0
VPS28-207ENST00000526977 RPS10P5Q9NQ39 176 aa15.02■□□□□ -0
VPS28-207ENST00000526977 M0R036 132 aa15.02□□□□□ -0.01
VPS28-207ENST00000526977 FSHBP01225 129 aa15.02□□□□□ -0.01
VPS28-207ENST00000526977 IFNA1P01562 189 aa15.02□□□□□ -0.01
VPS28-207ENST00000526977 RPL29P47914 159 aaKnown RBP15.02□□□□□ -0.01
VPS28-207ENST00000526977 CD69Q07108 199 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms