RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 OPRK1P41145 380 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 ZNF542PQ5EBM4 170 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 LINC01545Q5VT33 79 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 OSR1Q8TAX0 266 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 CHCHD1Q96BP2 118 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 ZNF837Q96EG3 531 aaPredicted RBP9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 TAAR6Q96RI8 345 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 C19orf67A6NJJ6 358 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 C15orf62A8K5M9 175 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 APOMO95445 188 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 CT45A6P0DMU7 189 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 CT45A5P0DMU8 189 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 CT45A7P0DMV0 189 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 GPR12P47775 334 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 CT45A1Q5HYN5 189 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 Q6ZS49 121 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 H2BFWTQ7Z2G1 175 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 CT45A3Q8NHU0 189 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 ABHD17AQ96GS6 310 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 TMEM131Q92545 1883 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 A8MWL6 223 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 OR2J3O76001 311 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 LINC00205P59089 165 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 RPS21P63220 83 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 GAGE13Q4V321 117 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 HES3Q5TGS1 186 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 SGK494Q96LW2 274 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 IGHV3-15A0A0B4J1V0 119 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 XGP55808 180 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 HHEXQ03014 270 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 CR1LQ2VPA4 569 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 LHX8Q68G74 356 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 WIPF2Q8TF74 440 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 ST8SIA1Q92185 356 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 HARBI1Q96MB7 349 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 COL25A1Q9BXS0 654 aaPredicted RBP9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 IDI2-AS1Q9NZ38 188 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 TNFRSF18Q9Y5U5 241 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 SRSF6Q13247 344 aaKnown RBP9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 GLMPQ8WWB7 406 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 TANC2Q9HCD6 1990 aa9.92□□□□□ -0.82
LIMCH1-213ENST00000511496 IGKV3-11P04433 115 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 ATP5J2P56134 94 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 RHBDD2Q6NTF9 364 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 PPP1R32Q7Z5V6 425 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 TTC9CQ8N5M4 171 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 GCSAMQ8N6F7 178 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 OR4X2Q8NGF9 303 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 OR10X1Q8NGY0 326 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 GTSF1Q8WW33 167 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 IGHV3-20A0A0C4DH32 117 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 PRSS29PA6NIE9 313 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 OR9G9P0C7N8 305 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 ZADH2Q8N4Q0 377 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 DPF1Q92782 380 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 THADAQ6YHU6 1953 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 MYO15AQ9UKN7 3530 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 NPIPB5A8MRT5 1133 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 AREGP15514 252 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 RPL30P62888 115 aaKnown RBP9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 RASL11AQ6T310 242 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 Q6ZUT4 128 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 OXGR1Q96P68 337 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 CDIP1Q9H305 208 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 YAE1D1Q9NRH1 226 aa9.91□□□□□ -0.82
LIMCH1-213ENST00000511496 SSBP2P81877 361 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 FAM214BQ7L5A3 538 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 ABHD12Q8N2K0 398 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 ZNF645Q8N7E2 425 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 OR9G4Q8NGQ1 327 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 PLPPR2Q96GM1 343 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 GRAMD2BQ96HH9 432 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 KLRF1Q9NZS2 232 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 GGTLC3B5MD39 225 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 FAM53AQ6NSI3 398 aaPredicted RBP9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 FOXL2NBQ6ZUU3 175 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 MKXQ8IYA7 352 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 FAM169BQ8N8A8 192 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 PGLYRP4Q96LB8 373 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 TTTY13Q9BZ97 58 aa9.9□□□□□ -0.82
LIMCH1-213ENST00000511496 C17orf98A8MV24 154 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 DHHO43323 396 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 NOTCH4Q99466 2003 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 TRBV20-1A0A075B6N2 111 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 FXYD7P58549 80 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 FGF12P61328 243 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 HBBP68871 147 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 TMEM178AQ8NBL3 297 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 HSD17B10Q99714 261 aaKnown RBP9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 LINC00312Q9Y6C7 94 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 TEPPQ6URK8 271 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 CRIPAKQ8N1N5 446 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 SLC37A2Q8TED4 501 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 ZNF747Q9BV97 191 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 TM2D2Q9BX73 214 aa9.89□□□□□ -0.83
LIMCH1-213ENST00000511496 MPDU1O75352 247 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 APOHP02749 345 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 PF4V1P10720 104 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 GABRG2P18507 467 aa9.88□□□□□ -0.83
LIMCH1-213ENST00000511496 YRDCQ86U90 279 aaKnown RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms