RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 APOA1P02647 267 aa8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 UCP3P55916 312 aa8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 HSPE1P61604 102 aaKnown RBP8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 NCS1P62166 190 aa8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 IZUMO4Q1ZYL8 232 aa8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 SPINK9Q5DT21 86 aa8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 RNASE12Q5GAN4 147 aaKnown RBP8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 FAM90A2PQ658T7 463 aa8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 GBGT1Q8N5D6 347 aa8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 TMEM217Q8N7C4 229 aa8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 CMTM3Q96MX0 182 aa8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 MRPS26Q9BYN8 205 aaKnown RBP8.5□□□□□ -1.05
HMGCS1-204ENST00000507293 MPTX1A8MV57 137 aa8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 HPGDSO60760 199 aa8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 ELK1P19419 428 aa8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 PI3P19957 117 aa8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 CMC4P56277 68 aaPredicted RBP8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 VBP1P61758 197 aa8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 ERHP84090 104 aaKnown RBP8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 TCF24Q7RTU0 167 aa8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 GINS3Q9BRX5 216 aa8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 FUNDC2Q9BWH2 189 aa8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 CSTL1Q9H114 145 aa8.49□□□□□ -1.05
HMGCS1-204ENST00000507293 IGKV1-5P01602 117 aa8.48□□□□□ -1.05
HMGCS1-204ENST00000507293 PGAM2P15259 253 aa8.48□□□□□ -1.05
HMGCS1-204ENST00000507293 RND3P61587 244 aa8.48□□□□□ -1.05
HMGCS1-204ENST00000507293 TOMM20LQ6UXN7 152 aa8.48□□□□□ -1.05
HMGCS1-204ENST00000507293 SLC35G3Q8N808 338 aa8.48□□□□□ -1.05
HMGCS1-204ENST00000507293 GATAD1Q8WUU5 269 aa8.48□□□□□ -1.05
HMGCS1-204ENST00000507293 PHLDA1Q8WV24 401 aaPredicted RBP8.48□□□□□ -1.05
HMGCS1-204ENST00000507293 ST8SIA2Q92186 375 aa8.48□□□□□ -1.05
HMGCS1-204ENST00000507293 TP53RKQ96S44 253 aa8.48□□□□□ -1.05
HMGCS1-204ENST00000507293 IGHV3-66A0A0C4DH42 116 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 FAM25AB3EWG3 89 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 FAM25CB3EWG5 89 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 FAM25GB3EWG6 89 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 ST8SIA3O43173 380 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 APOHP02749 345 aaPredicted RBP8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 NPBWR1P48145 328 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 AKR1C2P52895 323 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 PIGPP57054 158 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 PAFAH1B2P68402 229 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 RNASE10Q5GAN6 216 aaKnown RBP8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 ZNF600Q6ZNG1 722 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 DUSP18Q8NEJ0 188 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 RARRES2Q99969 163 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 VSIRQ9H7M9 311 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 ZFAND3Q9H8U3 227 aa8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 PUS1Q9Y606 427 aaKnown RBP eCLIP8.47□□□□□ -1.05
HMGCS1-204ENST00000507293 A0A1B0GU03 582 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 CA1P00915 261 aaPredicted RBP8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 IFNA17P01571 189 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 P0C879 139 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 SMIM18P0DKX4 95 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 RNASE2P10153 161 aaKnown RBP8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 SNCAP37840 140 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 PPP5CP53041 499 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 DEFB131AP59861 70 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 LEMD1Q68G75 181 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 LHFPL1Q86WI0 220 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 LILRB2Q8N423 598 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 RPP25LQ8N5L8 163 aaKnown RBP8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 FAM24BQ8N5W8 94 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 OR11H2Q8NH07 326 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 ZNF486Q96H40 463 aaPredicted RBP8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 PDCD10Q9BUL8 212 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 MS4A6AQ9H2W1 248 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 KLK11Q9UBX7 282 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 FBXL17Q9UF56 701 aa8.46□□□□□ -1.06
HMGCS1-204ENST00000507293 A0A0B4J293 547 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 C3orf85A0A1B0GTC6 90 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 INS-IGF2F8WCM5 200 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 DNASE2O00115 360 aaPredicted RBP8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 CORTO00230 105 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 DEDDO75618 318 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 DFFBO76075 338 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 TMEM50AO95807 157 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 CD3DP04234 171 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 CD5P06127 495 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 HOXA1P49639 335 aaPredicted RBP8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 RORCP51449 518 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 NANOS2P60321 138 aaKnown RBP8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 RPL11P62913 178 aaKnown RBP8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 TRIM16LQ309B1 348 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 PVRIGQ6DKI7 326 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 MZT2AQ6P582 158 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 GPR141Q7Z602 305 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 ARRDC1Q8N5I2 433 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 OR52I2Q8NH67 350 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 C11orf45Q8TAV5 145 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 C11orf68Q9H3H3 251 aaKnown RBP8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 MRPL36Q9P0J6 103 aaKnown RBP8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 EXTL2Q9UBQ6 330 aa8.45□□□□□ -1.06
HMGCS1-204ENST00000507293 AGRNO00468 2067 aa8.44□□□□□ -1.06
HMGCS1-204ENST00000507293 TRAV2A0A0B4J234 112 aa8.44□□□□□ -1.06
HMGCS1-204ENST00000507293 A0A0G2JRQ6 117 aa8.44□□□□□ -1.06
HMGCS1-204ENST00000507293 DEFB4AO15263 64 aa8.44□□□□□ -1.06
HMGCS1-204ENST00000507293 ATG12O94817 140 aa8.44□□□□□ -1.06
HMGCS1-204ENST00000507293 ETV6P41212 452 aa8.44□□□□□ -1.06
HMGCS1-204ENST00000507293 SUB1P53999 127 aaKnown RBP eCLIP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms