RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 PRSS37A4D1T9 235 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 H0YIG0 161 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 NPFFO15130 113 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 COX6CP09669 75 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 RBMY1A1P0DJD3 496 aaKnown RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 ZNF823P16415 610 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 GAS1P54826 345 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 ZNF121P58317 390 aaPredicted RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 DHRS2Q13268 280 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 NNATQ16517 81 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 MS4A6EQ96DS6 147 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 HAPLN2Q9GZV7 340 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 PBOV1Q9GZY1 135 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 VPREB3Q9UKI3 123 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 STAB2Q8WWQ8 2551 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 FAM240AA0A1B0GVK7 77 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 CLPSL1A2RUU4 121 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 IGHV2-5P01817 119 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 NHLRC4P0CG21 123 aaPredicted RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 RPS4Y1P22090 263 aaKnown RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 PTGDSP41222 190 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 TNP2Q05952 138 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 UTF1Q5T230 341 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 TSPO2Q5TGU0 170 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 OR4C11Q6IEV9 310 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 PRSS54Q6PEW0 395 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 GLIPR1L1Q6UWM5 242 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 ANKRD37Q7Z713 158 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 IMMP2LQ96T52 175 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 HSD17B10Q99714 261 aaKnown RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 KIAA1456Q9P272 454 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 KLK5Q9Y337 293 aaPredicted RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 A0A087WWC5 75 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 TRAV8-4A0A0B4J246 113 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 TCRBV5S1A1TA0A578 114 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 GCM2O75603 506 aaPredicted RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 MPZP25189 248 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 DUTP33316 252 aaKnown RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 NTF4P34130 210 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 NCBP2P52298 156 aaKnown RBP eCLIP4.3□□□□□ -1.72
USP54-216ENST00000498143 Q499Y3 187 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 SAMD5Q5TGI4 173 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 ARPC1AQ92747 370 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 TM4SF18Q96CE8 201 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 C1orf159Q96HA4 380 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 OR8B2Q96RD0 313 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 BPESC1Q9GZL8 116 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 MTFP1Q9UDX5 166 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 TIMM10BQ9Y5J6 103 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 TRAV8-1A0A0A6YYK1 113 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 A0A0U1RQV1 116 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 UBE2L5PA0A1B0GUS4 154 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 MBD3L3A6NE82 208 aaPredicted RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 IGHA1P01876 353 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 COX6A1P12074 109 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 CRYBB3P26998 211 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 C12orf73Q69YU5 71 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 C8orf86Q6ZUL3 223 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 LRRC25Q8N386 305 aaPredicted RBP4.3□□□□□ -1.72
USP54-216ENST00000498143 PLPPR1Q8TBJ4 325 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 CRYGNQ8WXF5 182 aa4.3□□□□□ -1.72
USP54-216ENST00000498143 ODAMA1E959 279 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 H3BS24 57 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 LDB3O75112 727 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 ACRV1P26436 265 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 DLX1P56177 255 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 UNC119Q13432 240 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 VMA21Q3ZAQ7 101 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 TEX36Q5VZQ5 186 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 SLC25A42Q86VD7 318 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 TTC9CQ8N5M4 171 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 CFHR4Q92496 578 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 KRTAP3-3Q9BYR6 98 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 KRTAP3-2Q9BYR7 98 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 FOXA2Q9Y261 457 aaPredicted RBP4.29□□□□□ -1.72
USP54-216ENST00000498143 DNAH12Q6ZR08 3092 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 ITPR2Q14571 2701 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 A0A087X0K7 114 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 C5orf49A4QMS7 147 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 PRSS46E5RG02 174 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 F6UB75 175 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 H3BP45 60 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 SLC17A2O00624 439 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 OR5AL1P0C617 328 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 CSN1S1P47710 185 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 RUNX1Q01196 453 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 EGR4Q05215 589 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 MUC7Q8TAX7 377 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 TMEM59Q9BXS4 323 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 PRSS50Q9UI38 385 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 VDAC3Q9Y277 283 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 TRAV9-2A0A087WT02 112 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 A0A1W2PPE3 182 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 MGST3O14880 152 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 TOMM40O96008 361 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 HLA-DRB1P01911 266 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 PSG9Q00887 426 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 TMEM91Q6ZNR0 172 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 OR9G1Q8NH87 305 aa4.29□□□□□ -1.72
USP54-216ENST00000498143 SLC25A40Q8TBP6 338 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms