RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NDFIP1Q9BT67 221 aa13.62□□□□□ -0.23
CCDC88B-209ENST00000494080 TMSB15BA0A087X1C1 80 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 IL6RP08887 468 aaPredicted RBP13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 FABP2P12104 132 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 C1orf147Q96MC9 270 aaPredicted RBP13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 HSPE1P61604 102 aaKnown RBP13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 BSPH1Q075Z2 132 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 RNFT1Q5M7Z0 435 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 FAM57AQ8TBR7 257 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 PROK2Q9HC23 129 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 ACACBO00763 2458 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 C8orf88P0DMB2 117 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 RIPPLY3P57055 190 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 IL15RAQ13261 267 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 PTPRQQ9UMZ3 2332 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 ARF6P62330 175 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 SELENOKQ9Y6D0 94 aa13.61□□□□□ -0.23
CCDC88B-209ENST00000494080 RPL27AP46776 148 aaKnown RBP13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 MDS2Q8NDY4 140 aa13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 C5orf17Q8NAS9 161 aa13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 TRAV9-1A0A075B6T8 112 aa13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 PGPA6NDG6 321 aa13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 KIR2DL2P43627 348 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 WDR82Q6UXN9 313 aa13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 RNF166Q96A37 237 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 ZNF430Q9H8G1 570 aaPredicted RBP13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 PLCE1Q9P212 2302 aa13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 CDC42EP3Q9UKI2 254 aa13.6□□□□□ -0.23
CCDC88B-209ENST00000494080 TMEM50AO95807 157 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 FOXL1Q12952 345 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 RASL11BQ9BPW5 248 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 COL25A1Q9BXS0 654 aaPredicted RBP13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 IGHV1-69-2A0A0G2JMI3 117 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 GCSHP23434 173 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 S100A4P26447 101 aaKnown RBP13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 TIMP3P35625 211 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 STXBP6Q8NFX7 210 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 TNFRSF19Q9NS68 423 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 PLA2G2EQ9NZK7 142 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 TMEM177Q53S58 311 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 LYPD6BQ8NI32 183 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 PERPQ96FX8 193 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 NEU1Q99519 415 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 LIME1Q9H400 295 aa13.59□□□□□ -0.23
CCDC88B-209ENST00000494080 IGKV3-7A0A075B6H7 116 aa13.58□□□□□ -0.23
CCDC88B-209ENST00000494080 TRAV9-2A0A087WT02 112 aa13.58□□□□□ -0.23
CCDC88B-209ENST00000494080 A0A0G2JRQ6 117 aa13.58□□□□□ -0.23
CCDC88B-209ENST00000494080 ELOVL5Q9NYP7 299 aa13.58□□□□□ -0.23
CCDC88B-209ENST00000494080 CHD3Q12873 2000 aaKnown RBP13.58□□□□□ -0.23
CCDC88B-209ENST00000494080 IGHV1-18A0A0C4DH31 117 aa13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 ETV2O00321 342 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 REG1AP05451 166 aa13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 SCGB1C2P0DMR2 95 aa13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 CLEC5AQ9NY25 188 aa13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 F2RL2O00254 374 aa13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 RAMP3O60896 148 aa13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 LCN12Q6JVE5 192 aa13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 PRNTQ86SH4 94 aa13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 EAF1Q96JC9 268 aaPredicted RBP13.58□□□□□ -0.24
CCDC88B-209ENST00000494080 FAM222BQ8WU58 562 aa13.57□□□□□ -0.24
CCDC88B-209ENST00000494080 MC5RP33032 325 aa13.57□□□□□ -0.24
CCDC88B-209ENST00000494080 PPIAL4CA0A0B4J2A2 164 aa13.57□□□□□ -0.24
CCDC88B-209ENST00000494080 PPIAL4GP0DN37 164 aa13.57□□□□□ -0.24
CCDC88B-209ENST00000494080 AGMATQ9BSE5 352 aa13.57□□□□□ -0.24
CCDC88B-209ENST00000494080 F11RQ9Y624 299 aaKnown RBP13.57□□□□□ -0.24
CCDC88B-209ENST00000494080 PMCHL2Q9BQD1 86 aa13.57□□□□□ -0.24
CCDC88B-209ENST00000494080 ANAPC10Q9UM13 185 aa13.57□□□□□ -0.24
CCDC88B-209ENST00000494080 PCDH15Q96QU1 1955 aa13.57□□□□□ -0.24
CCDC88B-209ENST00000494080 IGFBP2P18065 325 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 H3BTX0 84 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 PSPNO60542 156 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 PRB3Q04118 309 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 Q6ZRM9 215 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 SSBP4Q9BWG4 385 aaPredicted RBP13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 ECSCRQ19T08 205 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 MEGF9Q9H1U4 602 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 C1RLQ9NZP8 487 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 FREM1Q5H8C1 2179 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 IGKV1-5P01602 117 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 LGALS7P47929 136 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 ZNF497Q6ZNH5 498 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 MIR17HGQ75NE6 70 aa13.56□□□□□ -0.24
CCDC88B-209ENST00000494080 LIPFP07098 398 aa13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 GATA2P23769 480 aaPredicted RBP13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 NTF4P34130 210 aa13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 UBE2V1Q13404 147 aa13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 TMEM42Q69YG0 159 aa13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 OR9G1Q8NH87 305 aa13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 CCL3L1P16619 93 aa13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 C20orf144Q9BQM9 153 aa13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 HSPB7Q9UBY9 170 aa13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 CA1P00915 261 aaPredicted RBP13.55□□□□□ -0.24
CCDC88B-209ENST00000494080 MED13Q9UHV7 2174 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 CDKN1AP38936 164 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 HBBP68871 147 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 OR4C13Q8NGP0 309 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 HS3ST6Q96QI5 342 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 GNB1LQ9BYB4 327 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 WDR83OSQ9Y284 106 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 TMEM116Q8NCL8 245 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 161.8 ms