RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 RPEQ96AT9 228 aa16.96■□□□□ 0.31
CCDC88B-208ENST00000492980 FNDC4Q9H6D8 234 aaPredicted RBP16.96■□□□□ 0.31
CCDC88B-208ENST00000492980 FUT9Q9Y231 359 aa16.96■□□□□ 0.31
CCDC88B-208ENST00000492980 HIVEP3Q5T1R4 2406 aa16.96■□□□□ 0.31
CCDC88B-208ENST00000492980 ACTL6BO94805 426 aa16.96■□□□□ 0.3
CCDC88B-208ENST00000492980 UQCRFS1P47985 274 aa16.96■□□□□ 0.3
CCDC88B-208ENST00000492980 SNRPEP62304 92 aaKnown RBP16.96■□□□□ 0.3
CCDC88B-208ENST00000492980 ITLN2Q8WWU7 325 aaPredicted RBP16.96■□□□□ 0.3
CCDC88B-208ENST00000492980 ACY3Q96HD9 319 aa16.96■□□□□ 0.3
CCDC88B-208ENST00000492980 YTHDF2Q9Y5A9 579 aaKnown RBP16.96■□□□□ 0.3
CCDC88B-208ENST00000492980 C5orf52A6NGY3 159 aa16.95■□□□□ 0.3
CCDC88B-208ENST00000492980 C4orf17Q53FE4 359 aa16.95■□□□□ 0.3
CCDC88B-208ENST00000492980 C16orf82Q7Z2V1 217 aa16.95■□□□□ 0.3
CCDC88B-208ENST00000492980 SIGLEC9Q9Y336 463 aa16.95■□□□□ 0.3
CCDC88B-208ENST00000492980 IGLC7A0M8Q6 106 aa16.94■□□□□ 0.3
CCDC88B-208ENST00000492980 VENTXO95231 258 aa16.94■□□□□ 0.3
CCDC88B-208ENST00000492980 REG1AP05451 166 aa16.94■□□□□ 0.3
CCDC88B-208ENST00000492980 NAV3Q8IVL0 2385 aa16.94■□□□□ 0.3
CCDC88B-208ENST00000492980 CLN5O75503 358 aa16.94■□□□□ 0.3
CCDC88B-208ENST00000492980 NDUFB4O95168 129 aa16.94■□□□□ 0.3
CCDC88B-208ENST00000492980 ARF6P62330 175 aa16.94■□□□□ 0.3
CCDC88B-208ENST00000492980 LDLRAD2Q5SZI1 272 aa16.94■□□□□ 0.3
CCDC88B-208ENST00000492980 SSBP3Q9BWW4 388 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-208ENST00000492980 MT-CO2P00403 227 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 S100A6P06703 90 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 RPL35P42766 123 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 RPL27AP46776 148 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 AKR1D1P51857 326 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 SSBP2P81877 361 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 TNXAQ16473 311 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 DERL1Q9BUN8 251 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 LOC105371242A0A075B767 164 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 OR5G3P0C626 314 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 GNLYP22749 145 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 C19orf24Q9BVV8 132 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 DOK5Q9P104 306 aa16.93■□□□□ 0.3
CCDC88B-208ENST00000492980 COMPP49747 757 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-208ENST00000492980 TPTE2P1Q5T6R2 138 aa16.92■□□□□ 0.3
CCDC88B-208ENST00000492980 PVRIGQ6DKI7 326 aa16.92■□□□□ 0.3
CCDC88B-208ENST00000492980 LINC00518Q8N0U6 118 aa16.92■□□□□ 0.3
CCDC88B-208ENST00000492980 OR11H6Q8NGC7 330 aa16.92■□□□□ 0.3
CCDC88B-208ENST00000492980 FAM210BQ96KR6 192 aa16.92■□□□□ 0.3
CCDC88B-208ENST00000492980 METTL1Q9UBP6 276 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-208ENST00000492980 SCO2A0A1W2PP80 73 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 M0R1W7 72 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 IGHV2-5P01817 119 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 CDKN1AP38936 164 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 MRPL41Q8IXM3 137 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 ZNF114Q8NC26 417 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 TECRQ9NZ01 308 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 PLXNB1O43157 2135 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 PSMB11A5LHX3 300 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 AREGP15514 252 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 PPP1R27Q86WC6 154 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 TMEM37Q8WXS4 190 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 NPIPB3Q92617 1050 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 ZNF503Q96F45 646 aa16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 MRPL36Q9P0J6 103 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-208ENST00000492980 TRBV24-1A0A075B6N3 115 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 IGKV1D-37A0A075B6S9 117 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 UBE2CO00762 179 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 IGHV3-48P01763 117 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 LINC01551Q86U37 167 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 THAP8Q8NA92 274 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 ARHGAP32A7KAX9 2087 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 H7BYZ3 331 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 TIMM23O14925 209 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 HTR1DP28221 377 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 MFAP2P55001 183 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 HCP5Q6MZN7 132 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 RNF5Q99942 180 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 FBXL15Q9H469 300 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 UBTD1Q9HAC8 227 aa16.9■□□□□ 0.3
CCDC88B-208ENST00000492980 PFN1P07737 140 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-208ENST00000492980 KLRD1Q13241 179 aa16.89■□□□□ 0.29
CCDC88B-208ENST00000492980 ANAPC16Q96DE5 110 aa16.89■□□□□ 0.29
CCDC88B-208ENST00000492980 TMEM167BQ9NRX6 74 aa16.89■□□□□ 0.29
CCDC88B-208ENST00000492980 DPM3Q9P2X0 92 aa16.89■□□□□ 0.29
CCDC88B-208ENST00000492980 ARL2-SNX15V9GYD0 113 aa16.89■□□□□ 0.29
CCDC88B-208ENST00000492980 TCRBV4S1A1TA0A5B7 111 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 A6NNC1 897 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 C19orf84I3L1E1 186 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 NDUFS7O75251 213 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 GPR6P46095 362 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 SPTBN1Q01082 2364 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 TRBV20OR9-2A0A075B6H5 130 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 ODF3BA8MYP8 253 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 TEX22C9J3V5 150 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 CRYGCP07315 174 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 PRTN3P24158 256 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 TAS2R45P59539 299 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 PQLC2Q6ZP29 291 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 C19orf35Q6ZS72 473 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 NECAP1Q8NC96 275 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 OR5T1Q8NG75 326 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 C11orf52Q96A22 123 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 SLC25A33Q9BSK2 321 aa16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 MRPL32Q9BYC8 188 aaKnown RBP16.88■□□□□ 0.29
CCDC88B-208ENST00000492980 AP4M1O00189 453 aa16.87■□□□□ 0.29
CCDC88B-208ENST00000492980 APELAP0DMC3 54 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms