RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 LINC00311Q8N616 119 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 SIGLECL1Q8N7X8 197 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 ZNF114Q8NC26 417 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 OR1L4Q8NGR5 311 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 KCNS1Q96KK3 526 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 TMEM68Q96MH6 324 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 SLC25A33Q9BSK2 321 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 VAMP8Q9BV40 100 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 PLEKHA3Q9HB20 300 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 PATZ1Q9HBE1 687 aaKnown RBP4.75□□□□□ -1.65
VPS41-214ENST00000490924 ZNF71Q9NQZ8 489 aaPredicted RBP4.75□□□□□ -1.65
VPS41-214ENST00000490924 IDI2-AS1Q9NZ38 188 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 YTHDF2Q9Y5A9 579 aaKnown RBP4.75□□□□□ -1.65
VPS41-214ENST00000490924 SLC25A15Q9Y619 301 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 LINC00312Q9Y6C7 94 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 ZNF292O60281 2723 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 DOCK10Q96BY6 2186 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 ZNF318Q5VUA4 2279 aa4.75□□□□□ -1.65
VPS41-214ENST00000490924 FREM1Q5H8C1 2179 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 IGHV1-18A0A0C4DH31 117 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 A0A1W2PNU3 283 aaPredicted RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 hADV38S2A0JD32 116 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 PSMB11A5LHX3 300 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 IZUMO1RA6ND01 250 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 K7EN84 100 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 WNT9BO14905 357 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 ZNF253O75346 499 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 ZNF324O75467 553 aaPredicted RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 CEACAM4O75871 244 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 SERF1AO75920 110 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 LYZL6O75951 148 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 FSTL3O95633 263 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 SELLP14151 372 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 NDUFB7P17568 137 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 PMCHP20382 165 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 USF1P22415 310 aaPredicted RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 TNFSF4P23510 183 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 CTRLP40313 264 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 REG1BP48304 166 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 ZNF137PP52743 207 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 SUB1P53999 127 aaKnown RBP eCLIP4.74□□□□□ -1.65
VPS41-214ENST00000490924 KLF3P57682 345 aaPredicted RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 SELENOVP59797 346 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 BPIFB3P59826 476 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 MRPS11P82912 194 aaKnown RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 RELQ04864 619 aaPredicted RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 C17orf58Q2M2W7 97 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 HLA-DRB5Q30154 266 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 TMEM177Q53S58 311 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 GCSAMLQ5JQS6 135 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 COL5A1-AS1Q5SY13 56 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 STUMQ69YW2 141 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 IGFL4Q6B9Z1 124 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 IGFL3Q6UXB1 125 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 UNQ6494/PRO21346Q6UXR6 183 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 TMEM136Q6ZRR5 245 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 ZNF833PQ6ZTB9 187 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 Q6ZWC4 215 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 BHLHA15Q7RTS1 189 aaPredicted RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 BAGE3Q86Y29 109 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 BAGE2Q86Y30 109 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 MED12LQ86YW9 2145 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 THAP8Q8NA92 274 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 NUP37Q8NFH4 326 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 OR2Z1Q8NG97 314 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 IGF2BP2-AS1Q96M15 143 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 OR2V2Q96R30 315 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 TBX15Q96SF7 602 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 NABP2Q9BQ15 211 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 DERL1Q9BUN8 251 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 GFRA4Q9GZZ7 299 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 GAL3ST2Q9H3Q3 398 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 SEPSECSQ9HD40 501 aaKnown RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 UQCR10Q9UDW1 63 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 RPUSD1Q9UJJ7 312 aaKnown RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 TP53TG3Q9ULZ0 132 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 PROCRQ9UNN8 238 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 MRPS16Q9Y3D3 137 aaKnown RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 AMMECR1Q9Y4X0 333 aaPredicted RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 KLF12Q9Y4X4 402 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 OR51B2Q9Y5P1 312 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 ANKRD11Q6UB99 2663 aaPredicted RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 SETXQ7Z333 2677 aaKnown RBP4.74□□□□□ -1.65
VPS41-214ENST00000490924 ASPMQ8IZT6 3477 aa4.74□□□□□ -1.65
VPS41-214ENST00000490924 ARHGAP21Q5T5U3 1957 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 TRBV6-1A0A0K0K1D8 114 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 SNURFLB1AK76 121 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 J3QR06 171 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 CRXO43186 299 aaPredicted RBP4.73□□□□□ -1.65
VPS41-214ENST00000490924 DLEU1O43261 78 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 CA2P00918 260 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 CRYAAP02489 173 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 APOA2P02652 100 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 SAA2P0DJI9 122 aaPredicted RBP4.73□□□□□ -1.65
VPS41-214ENST00000490924 HIST1H1EP10412 219 aaKnown RBP4.73□□□□□ -1.65
VPS41-214ENST00000490924 BMP5P22003 454 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 CEBPDP49716 269 aaPredicted RBP4.73□□□□□ -1.65
VPS41-214ENST00000490924 ZNF134P52741 427 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 PRRX1P54821 245 aa4.73□□□□□ -1.65
VPS41-214ENST00000490924 UBE2G2P60604 165 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms