RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 LIPFP07098 398 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 OSR1Q8TAX0 266 aaPredicted RBP10.9□□□□□ -0.66
HMGN1-216ENST00000486741 TMSB15BA0A087X1C1 80 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 PGPA6NDG6 321 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 SIAH2O43255 324 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 MMP23AO75900 390 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 NUBP1P53384 320 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 KRTAP27-1Q3LI81 207 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 SSX8Q7RTT4 187 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 C11orf53Q8IXP5 236 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 OR8I2Q8N0Y5 310 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 ZNF430Q9H8G1 570 aaPredicted RBP10.9□□□□□ -0.66
HMGN1-216ENST00000486741 SLC17A3O00476 420 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 TRGC1P0CF51 173 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 PERPQ96FX8 193 aa10.9□□□□□ -0.66
HMGN1-216ENST00000486741 UPK2O00526 184 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 KIAA1644Q3SXP7 199 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 TMEM14EPQ6UXP3 125 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 Q6ZPA2 131 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 IFI27L2Q9H2X8 130 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 IGHV3-23P01764 117 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 C8orf88P0DMB2 117 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 CRISP2P16562 243 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 PPOXP50336 477 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 ZNF134P52741 427 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 TAS2R60P59551 318 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 DMRTA1Q5VZB9 504 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 Q6ZSR3 168 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 OR1L6Q8NGR2 347 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 SSBP3Q9BWW4 388 aaPredicted RBP10.89□□□□□ -0.67
HMGN1-216ENST00000486741 AAMDCQ9H7C9 122 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 ZNF586Q9NXT0 402 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 THYN1Q9P016 225 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 TMEM178BH3BS89 294 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 HSBP1O75506 76 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 AGAP20933 346 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 LMO1P25800 156 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 MEF2CQ06413 473 aaPredicted RBP10.89□□□□□ -0.67
HMGN1-216ENST00000486741 TREML4Q6UXN2 200 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 KIR3DL3Q8N743 410 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 IGHV3OR16-13A0A075B7E8 117 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 ELOA3CA0A087WX78 387 aaPredicted RBP10.89□□□□□ -0.67
HMGN1-216ENST00000486741 IGHV3-74A0A0B4J1X5 117 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 IGLV1-44P01699 117 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 Q8NFD4 153 aa10.89□□□□□ -0.67
HMGN1-216ENST00000486741 SPATA31B1PQ5VZV4 182 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 IGFL3Q6UXB1 125 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 WDR83OSQ9Y284 106 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 E7EQL1 145 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 PLXNB1O43157 2135 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 ZNF253O75346 499 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 BRS3P32247 399 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 ZNF137PP52743 207 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 ZNF788Q6ZQV5 615 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 SEM1Q6ZVN7 128 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 SDF2L1Q9HCN8 221 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 TMEM250H0YL14 139 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.88□□□□□ -0.67
HMGN1-216ENST00000486741 J3KRW8 73 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 CSN3P07498 182 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 CDX1P47902 265 aaPredicted RBP10.88□□□□□ -0.67
HMGN1-216ENST00000486741 SPSB3Q6PJ21 355 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 C11orf42Q8N5U0 333 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.88□□□□□ -0.67
HMGN1-216ENST00000486741 OR2D3Q8NGH3 330 aa10.88□□□□□ -0.67
HMGN1-216ENST00000486741 CCDC168Q8NDH2 2452 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 COLCA2A8K830 154 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 NPIPB11E5RHQ5 1161 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 COL8A2P25067 703 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 LGALS7P47929 136 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 LEMD1Q68G75 181 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 C15orf62A8K5M9 175 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 IGKV1D-33P01593 117 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 IGKV1-33P01594 117 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 C1QTNF9P0C862 333 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 MFAP2P55001 183 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 HLA-DRB5Q30154 266 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 ZNF672Q499Z4 452 aaPredicted RBP10.87□□□□□ -0.67
HMGN1-216ENST00000486741 GRIFINA4D1Z8 144 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 HIST1H1BP16401 226 aaKnown RBP10.87□□□□□ -0.67
HMGN1-216ENST00000486741 COL8A1P27658 744 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 RPL23P62829 140 aaKnown RBP10.87□□□□□ -0.67
HMGN1-216ENST00000486741 RELBQ01201 579 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 DERL1Q9BUN8 251 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 TMEM133Q9H2Q1 129 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 HIGD1AQ9Y241 93 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 TEX50A0A1B0GTY4 177 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 RBFOX2O43251 390 aaKnown RBP eCLIP10.87□□□□□ -0.671e-18■□□□□ 8.3
HMGN1-216ENST00000486741 FCGR2BP31994 310 aaPredicted RBP10.87□□□□□ -0.67
HMGN1-216ENST00000486741 AMTP48728 403 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 RNASEKQ6P5S7 137 aaKnown RBP10.87□□□□□ -0.67
HMGN1-216ENST00000486741 HEPN1Q6WQI6 88 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 CYP2G1PQ6ZSU1 146 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 LINC00305Q7Z4B0 112 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 PRNTQ86SH4 94 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 RNF2Q99496 336 aa10.87□□□□□ -0.67
HMGN1-216ENST00000486741 SEPSECSQ9HD40 501 aaKnown RBP10.87□□□□□ -0.67
HMGN1-216ENST00000486741 MSMPQ1L6U9 139 aa10.86□□□□□ -0.67
HMGN1-216ENST00000486741 PLA2G2EQ9NZK7 142 aa10.86□□□□□ -0.67
HMGN1-216ENST00000486741 CEACAM8P31997 349 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms